Cluster: HRGMv2_4232_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_4232
- CGC Family ID: CGCFAM_00283
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_2 | 649 | 2133 | - | GH43_4 |
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_3 | 2322 | 3290 | - | GH43_26 |
| pfam | HRGMv2_4232_1 | HRGMv2_4232_1_4 | 3304 | 4563 | - | Fe-ADH_2 |
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_5 | 4576 | 5952 | - | GH43_4 |
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_6 | 6033 | 7520 | - | GH51_1 |
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_7 | 7540 | 9690 | - | GH51_2 |
| CAZyme | HRGMv2_4232_1 | HRGMv2_4232_1_8 | 9698 | 12610 | - | GH51_2 |
| STP | HRGMv2_4232_1 | HRGMv2_4232_1_9 | 12794 | 14254 | - | SBP_bac_1 |
| TC | HRGMv2_4232_1 | HRGMv2_4232_1_10 | 14348 | 15358 | - | 3.A.1.1.41 |
| TC | HRGMv2_4232_1 | HRGMv2_4232_1_11 | 15424 | 16428 | - | 3.A.1.1.11 |
| pfam | HRGMv2_4232_1 | HRGMv2_4232_1_12 | 16425 | 18791 | - | DUF5696 |
| pfam | HRGMv2_4232_1 | HRGMv2_4232_1_13 | 18775 | 20835 | - | Yip1 |
| TC | HRGMv2_4232_1 | HRGMv2_4232_1_14 | 20845 | 21714 | - | 3.A.1.1.39 |
| TC | HRGMv2_4232_1 | HRGMv2_4232_1_15 | 21717 | 22601 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_4232_1_2
Type: CAZyme
Location: 649 - 2133 (-)
Type: CAZyme
Location: 649 - 2133 (-)
Gene ID: HRGMv2_4232_1_3
Type: CAZyme
Location: 2322 - 3290 (-)
Type: CAZyme
Location: 2322 - 3290 (-)
Gene ID: HRGMv2_4232_1_4
Type: pfam
Location: 3304 - 4563 (-)
Type: pfam
Location: 3304 - 4563 (-)
Gene ID: HRGMv2_4232_1_5
Type: CAZyme
Location: 4576 - 5952 (-)
Type: CAZyme
Location: 4576 - 5952 (-)
Gene ID: HRGMv2_4232_1_6
Type: CAZyme
Location: 6033 - 7520 (-)
Type: CAZyme
Location: 6033 - 7520 (-)
Gene ID: HRGMv2_4232_1_7
Type: CAZyme
Location: 7540 - 9690 (-)
Type: CAZyme
Location: 7540 - 9690 (-)
Gene ID: HRGMv2_4232_1_8
Type: CAZyme
Location: 9698 - 12610 (-)
Type: CAZyme
Location: 9698 - 12610 (-)
Gene ID: HRGMv2_4232_1_9
Type: STP
Location: 12794 - 14254 (-)
Type: STP
Location: 12794 - 14254 (-)
Gene ID: HRGMv2_4232_1_10
Type: TC
Location: 14348 - 15358 (-)
Type: TC
Location: 14348 - 15358 (-)
Gene ID: HRGMv2_4232_1_11
Type: TC
Location: 15424 - 16428 (-)
Type: TC
Location: 15424 - 16428 (-)
Gene ID: HRGMv2_4232_1_12
Type: pfam
Location: 16425 - 18791 (-)
Type: pfam
Location: 16425 - 18791 (-)
Gene ID: HRGMv2_4232_1_13
Type: pfam
Location: 18775 - 20835 (-)
Type: pfam
Location: 18775 - 20835 (-)
Gene ID: HRGMv2_4232_1_14
Type: TC
Location: 20845 - 21714 (-)
Type: TC
Location: 20845 - 21714 (-)
Gene ID: HRGMv2_4232_1_15
Type: TC
Location: 21717 - 22601 (-)
Type: TC
Location: 21717 - 22601 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
MOL361
Family
Turicibacteraceae
Genus
Turicibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.