Cluster: HRGMv2_4228_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4228
- CGC Family ID: CGCFAM_01776
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4228_71 | HRGMv2_4228_71_1 | 3 | 1169 | + | 2.A.50.2.1 |
| TC | HRGMv2_4228_71 | HRGMv2_4228_71_2 | 1270 | 2352 | + | 2.A.9.3.1 |
| pfam | HRGMv2_4228_71 | HRGMv2_4228_71_3 | 2444 | 3502 | + | Queuosine_synth |
| CAZyme | HRGMv2_4228_71 | HRGMv2_4228_71_4 | 3608 | 4372 | + | GH23 |
Gene ID: HRGMv2_4228_71_1
Type: TC
Location: 3 - 1169 (+)
Type: TC
Location: 3 - 1169 (+)
Gene ID: HRGMv2_4228_71_2
Type: TC
Location: 1270 - 2352 (+)
Type: TC
Location: 1270 - 2352 (+)
Gene ID: HRGMv2_4228_71_3
Type: pfam
Location: 2444 - 3502 (+)
Type: pfam
Location: 2444 - 3502 (+)
Gene ID: HRGMv2_4228_71_4
Type: CAZyme
Location: 3608 - 4372 (+)
Type: CAZyme
Location: 3608 - 4372 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Zag111
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4228_71_2 | vegan > omnivore | 2.01601 | 0.02973 |
| HRGMv2_4228_71_2 | vegetarian > omnivore | 2.90938 | 0.01332 |
| HRGMv2_4228_71_3 | vegan > omnivore | 19.68004 | 0.02973 |
| HRGMv2_4228_71_3 | vegetarian > omnivore | 19.76189 | 0.01332 |