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Cluster: HRGMv2_4222_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4222_53 HRGMv2_4222_53_1 251 1459 - 3.B.1.1.1
TC HRGMv2_4222_53 HRGMv2_4222_53_2 1472 3274 - 3.B.1.1.1
pfam HRGMv2_4222_53 HRGMv2_4222_53_3 3302 3538 - OAD_gamma
pfam HRGMv2_4222_53 HRGMv2_4222_53_4 3535 4257 - BPL_LplA_LipB | LplA-B_cat
TC HRGMv2_4222_53 HRGMv2_4222_53_5 4317 6134 - 3.A.1.106.2
peptidase HRGMv2_4222_53 HRGMv2_4222_53_6 6188 7150 - S09.UPC
pfam HRGMv2_4222_53 HRGMv2_4222_53_7 7523 7831 + GIY-YIG
CAZyme HRGMv2_4222_53 HRGMv2_4222_53_8 8076 9458 - AA4
Gene ID: HRGMv2_4222_53_1
Type: TC
Location: 251 - 1459 (-)
Gene ID: HRGMv2_4222_53_2
Type: TC
Location: 1472 - 3274 (-)
Gene ID: HRGMv2_4222_53_3
Type: pfam
Location: 3302 - 3538 (-)
Gene ID: HRGMv2_4222_53_4
Type: pfam
Location: 3535 - 4257 (-)
Gene ID: HRGMv2_4222_53_5
Type: TC
Location: 4317 - 6134 (-)
Gene ID: HRGMv2_4222_53_6
Type: peptidase
Location: 6188 - 7150 (-)
Gene ID: HRGMv2_4222_53_7
Type: pfam
Location: 7523 - 7831 (+)
Gene ID: HRGMv2_4222_53_8
Type: CAZyme
Location: 8076 - 9458 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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