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Cluster: HRGMv2_4220_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4220_1 HRGMv2_4220_1_84 91042 91656 - GH23
pfam HRGMv2_4220_1 HRGMv2_4220_1_85 92023 92826 + PNP_UDP_1
TC HRGMv2_4220_1 HRGMv2_4220_1_86 92839 93105 + 9.A.4.2.3
TC HRGMv2_4220_1 HRGMv2_4220_1_87 93147 94496 + 2.A.38.1.1
TC HRGMv2_4220_1 HRGMv2_4220_1_88 94493 95962 + 2.A.38.1.1
pfam HRGMv2_4220_1 HRGMv2_4220_1_89 96069 97529 + OEP | OEP
TC HRGMv2_4220_1 HRGMv2_4220_1_90 97526 98686 + 8.A.1.6.2
TC HRGMv2_4220_1 HRGMv2_4220_1_91 98686 99414 + 3.A.1.122.2
TC HRGMv2_4220_1 HRGMv2_4220_1_92 99411 100640 + 3.A.1.122.12
Gene ID: HRGMv2_4220_1_84
Type: CAZyme
Location: 91042 - 91656 (-)
Gene ID: HRGMv2_4220_1_85
Type: pfam
Location: 92023 - 92826 (+)
Gene ID: HRGMv2_4220_1_86
Type: TC
Location: 92839 - 93105 (+)
Gene ID: HRGMv2_4220_1_87
Type: TC
Location: 93147 - 94496 (+)
Gene ID: HRGMv2_4220_1_88
Type: TC
Location: 94493 - 95962 (+)
Gene ID: HRGMv2_4220_1_89
Type: pfam
Location: 96069 - 97529 (+)
Gene ID: HRGMv2_4220_1_90
Type: TC
Location: 97526 - 98686 (+)
Gene ID: HRGMv2_4220_1_91
Type: TC
Location: 98686 - 99414 (+)
Gene ID: HRGMv2_4220_1_92
Type: TC
Location: 99411 - 100640 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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