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Cluster: HRGMv2_4219_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4219_2 HRGMv2_4219_2_44 45006 46010 - GT2
CAZyme HRGMv2_4219_2 HRGMv2_4219_2_45 46003 46992 - GT2
pfam HRGMv2_4219_2 HRGMv2_4219_2_46 47106 49136 - Ribonuc_red_lgN | Ribonuc_red_lgC
TC HRGMv2_4219_2 HRGMv2_4219_2_47 49623 51464 + 3.A.1.5.20
TC HRGMv2_4219_2 HRGMv2_4219_2_48 51469 52440 + 3.A.1.5.20
TC HRGMv2_4219_2 HRGMv2_4219_2_49 52437 53504 + 3.A.1.5.29
NULL(UNKNOWN) HRGMv2_4219_2 HRGMv2_4219_2_50 53522 54217 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4219_2 HRGMv2_4219_2_51 54228 54968 + 9.B.20.1.4
Gene ID: HRGMv2_4219_2_44
Type: CAZyme
Location: 45006 - 46010 (-)
Gene ID: HRGMv2_4219_2_45
Type: CAZyme
Location: 46003 - 46992 (-)
Gene ID: HRGMv2_4219_2_46
Type: pfam
Location: 47106 - 49136 (-)
Gene ID: HRGMv2_4219_2_47
Type: TC
Location: 49623 - 51464 (+)
Gene ID: HRGMv2_4219_2_48
Type: TC
Location: 51469 - 52440 (+)
Gene ID: HRGMv2_4219_2_49
Type: TC
Location: 52437 - 53504 (+)
Gene ID: HRGMv2_4219_2_50
Type:
Location: 53522 - 54217 (+)
Gene ID: HRGMv2_4219_2_51
Type: TC
Location: 54228 - 54968 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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