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Cluster: HRGMv2_4219_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4219_2 HRGMv2_4219_2_31 31553 33454 - GT2
pfam HRGMv2_4219_2 HRGMv2_4219_2_32 33447 34229 - UDPG_MGDP_dh
CAZyme HRGMv2_4219_2 HRGMv2_4219_2_33 34231 35247 - GT2
TF HRGMv2_4219_2 HRGMv2_4219_2_34 35385 35672 - HTH_3
pfam HRGMv2_4219_2 HRGMv2_4219_2_35 35754 37124 + DHHW | ALGX
TC HRGMv2_4219_2 HRGMv2_4219_2_36 37124 38527 + 2.A.50.2.1
TC HRGMv2_4219_2 HRGMv2_4219_2_37 38636 39730 + 2.A.9.3.7
pfam HRGMv2_4219_2 HRGMv2_4219_2_38 39797 40861 + Queuosine_synth
CAZyme HRGMv2_4219_2 HRGMv2_4219_2_39 41036 41782 + GH23
Gene ID: HRGMv2_4219_2_31
Type: CAZyme
Location: 31553 - 33454 (-)
Gene ID: HRGMv2_4219_2_32
Type: pfam
Location: 33447 - 34229 (-)
Gene ID: HRGMv2_4219_2_33
Type: CAZyme
Location: 34231 - 35247 (-)
Gene ID: HRGMv2_4219_2_34
Type: TF
Location: 35385 - 35672 (-)
Gene ID: HRGMv2_4219_2_35
Type: pfam
Location: 35754 - 37124 (+)
Gene ID: HRGMv2_4219_2_36
Type: TC
Location: 37124 - 38527 (+)
Gene ID: HRGMv2_4219_2_37
Type: TC
Location: 38636 - 39730 (+)
Gene ID: HRGMv2_4219_2_38
Type: pfam
Location: 39797 - 40861 (+)
Gene ID: HRGMv2_4219_2_39
Type: CAZyme
Location: 41036 - 41782 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4219_2_37 vegetarian > omnivore 19.94707 0.02973

🧭 Explore Read Mapping of CGC

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