dbCAN HGM

Cluster: HRGMv2_4218_CGC3

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_4218_2	HRGMv2_4218_2_65	65838	67274	-	2.A.6.2.22
TF	HRGMv2_4218_2	HRGMv2_4218_2_66	67363	67824	+	MarR
TC	HRGMv2_4218_2	HRGMv2_4218_2_67	67845	68852	+	8.A.1.1.2
TC	HRGMv2_4218_2	HRGMv2_4218_2_68	68981	70549	+	2.A.1.3.62
pfam	HRGMv2_4218_2	HRGMv2_4218_2_69	70558	71559	-	3Beta_HSD \| Epimerase \| Polysacc_synt_2 \| RmlD_sub_bind \| KR \| GDP_Man_Dehyd
TC	HRGMv2_4218_2	HRGMv2_4218_2_70	71867	73870	+	8.A.59.4.2
CAZyme	HRGMv2_4218_2	HRGMv2_4218_2_71	74254	75987	+	GT83

Gene ID: HRGMv2_4218_2_65
Type: TC
Location: 65838 - 67274 (-)

Gene ID: HRGMv2_4218_2_66
Type: TF
Location: 67363 - 67824 (+)

Gene ID: HRGMv2_4218_2_67
Type: TC
Location: 67845 - 68852 (+)

Gene ID: HRGMv2_4218_2_68
Type: TC
Location: 68981 - 70549 (+)

Gene ID: HRGMv2_4218_2_69
Type: pfam
Location: 70558 - 71559 (-)

Gene ID: HRGMv2_4218_2_70
Type: TC
Location: 71867 - 73870 (+)

Gene ID: HRGMv2_4218_2_71
Type: CAZyme
Location: 74254 - 75987 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4218_2_67	vegan > omnivore	3.40591	0.03451
HRGMv2_4218_2_67	vegetarian > omnivore	3.31941	0.01332
HRGMv2_4218_2_68	vegan > omnivore	17.66984	0.03451
HRGMv2_4218_2_68	vegetarian > omnivore	19.45593	0.01332
HRGMv2_4218_2_70	vegan > omnivore	3.01036	0.03451
HRGMv2_4218_2_70	vegetarian > omnivore	3.13289	0.01332
HRGMv2_4218_2_71	vegetarian > omnivore	1.73503	0.01332

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4218_2_67	vegan > omnivore	19.88410	0.01287
HRGMv2_4218_2_68	vegan > omnivore	3.11958	0.01287
HRGMv2_4218_2_70	vegan > omnivore	1.71747	0.01287