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Cluster: HRGMv2_4216_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4216_4 HRGMv2_4216_4_127 111839 113023 + GH88
TC HRGMv2_4216_4 HRGMv2_4216_4_128 113036 113527 + 4.A.6.1.14
TC HRGMv2_4216_4 HRGMv2_4216_4_129 113537 114307 + 4.A.6.1.14
TC HRGMv2_4216_4 HRGMv2_4216_4_130 114297 115103 + 4.A.6.1.14
CAZyme HRGMv2_4216_4 HRGMv2_4216_4_131 115150 116901 + PL12_1
CAZyme HRGMv2_4216_4 HRGMv2_4216_4_132 116909 118858 + PL8_1
TC HRGMv2_4216_4 HRGMv2_4216_4_133 119024 120061 + 3.A.1.20.1
pfam HRGMv2_4216_4 HRGMv2_4216_4_134 120072 120920 + GDPD | DUF4996
TC HRGMv2_4216_4 HRGMv2_4216_4_135 120907 121926 + 3.A.1.20.1
Gene ID: HRGMv2_4216_4_127
Type: CAZyme
Location: 111839 - 113023 (+)
Gene ID: HRGMv2_4216_4_128
Type: TC
Location: 113036 - 113527 (+)
Gene ID: HRGMv2_4216_4_129
Type: TC
Location: 113537 - 114307 (+)
Gene ID: HRGMv2_4216_4_130
Type: TC
Location: 114297 - 115103 (+)
Gene ID: HRGMv2_4216_4_131
Type: CAZyme
Location: 115150 - 116901 (+)
Gene ID: HRGMv2_4216_4_132
Type: CAZyme
Location: 116909 - 118858 (+)
Gene ID: HRGMv2_4216_4_133
Type: TC
Location: 119024 - 120061 (+)
Gene ID: HRGMv2_4216_4_134
Type: pfam
Location: 120072 - 120920 (+)
Gene ID: HRGMv2_4216_4_135
Type: TC
Location: 120907 - 121926 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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