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Cluster: HRGMv2_4200_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4200_3 HRGMv2_4200_3_49 47512 48441 + 2.A.19.5.1
TC HRGMv2_4200_3 HRGMv2_4200_3_50 48472 49983 - 2.A.38.1.1
TC HRGMv2_4200_3 HRGMv2_4200_3_51 49967 51325 - 2.A.38.1.1
TC HRGMv2_4200_3 HRGMv2_4200_3_52 51470 52087 + 9.B.31.1.1
CAZyme HRGMv2_4200_3 HRGMv2_4200_3_53 52075 53214 + GT28
pfam HRGMv2_4200_3 HRGMv2_4200_3_54 53207 54028 - S6PP | Hydrolase_3
TC HRGMv2_4200_3 HRGMv2_4200_3_55 54006 55394 - 2.A.66.1.37
Gene ID: HRGMv2_4200_3_49
Type: TC
Location: 47512 - 48441 (+)
Gene ID: HRGMv2_4200_3_50
Type: TC
Location: 48472 - 49983 (-)
Gene ID: HRGMv2_4200_3_51
Type: TC
Location: 49967 - 51325 (-)
Gene ID: HRGMv2_4200_3_52
Type: TC
Location: 51470 - 52087 (+)
Gene ID: HRGMv2_4200_3_53
Type: CAZyme
Location: 52075 - 53214 (+)
Gene ID: HRGMv2_4200_3_54
Type: pfam
Location: 53207 - 54028 (-)
Gene ID: HRGMv2_4200_3_55
Type: TC
Location: 54006 - 55394 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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