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Cluster: HRGMv2_4200_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4200_38 HRGMv2_4200_38_11 11441 12871 - GH1
TC HRGMv2_4200_38 HRGMv2_4200_38_12 12861 14243 - 4.A.3.2.3
TF HRGMv2_4200_38 HRGMv2_4200_38_13 14457 16850 - TrmB
NULL(UNKNOWN) HRGMv2_4200_38 HRGMv2_4200_38_14 16847 17281 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4200_38 HRGMv2_4200_38_15 17268 18728 - GH1
pfam HRGMv2_4200_38 HRGMv2_4200_38_16 18989 19792 + DUF1275
NULL(UNKNOWN) HRGMv2_4200_38 HRGMv2_4200_38_17 20172 20393 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4200_38 HRGMv2_4200_38_18 20539 20814 - 2.A.123.2.2
Gene ID: HRGMv2_4200_38_11
Type: CAZyme
Location: 11441 - 12871 (-)
Gene ID: HRGMv2_4200_38_12
Type: TC
Location: 12861 - 14243 (-)
Gene ID: HRGMv2_4200_38_13
Type: TF
Location: 14457 - 16850 (-)
Gene ID: HRGMv2_4200_38_14
Type:
Location: 16847 - 17281 (-)
Gene ID: HRGMv2_4200_38_15
Type: CAZyme
Location: 17268 - 18728 (-)
Gene ID: HRGMv2_4200_38_16
Type: pfam
Location: 18989 - 19792 (+)
Gene ID: HRGMv2_4200_38_17
Type:
Location: 20172 - 20393 (+)
Gene ID: HRGMv2_4200_38_18
Type: TC
Location: 20539 - 20814 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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