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Cluster: HRGMv2_4200_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4200_2 HRGMv2_4200_2_22 28316 28840 + 2.A.88.3.1
pfam HRGMv2_4200_2 HRGMv2_4200_2_23 30046 31041 - Y_phosphatase3
TC HRGMv2_4200_2 HRGMv2_4200_2_24 31125 31718 - 2.A.115.2.14
TC HRGMv2_4200_2 HRGMv2_4200_2_25 31733 33100 - 2.A.45.2.2
peptidase HRGMv2_4200_2 HRGMv2_4200_2_26 33129 34127 - M19.UNW
TC HRGMv2_4200_2 HRGMv2_4200_2_27 34188 35435 - 2.A.37.2.2
CAZyme HRGMv2_4200_2 HRGMv2_4200_2_28 35585 37813 - GH31_3
CAZyme HRGMv2_4200_2 HRGMv2_4200_2_29 37814 39763 - GH42
TC HRGMv2_4200_2 HRGMv2_4200_2_30 39756 41063 - 4.A.3.2.2
TF HRGMv2_4200_2 HRGMv2_4200_2_31 41233 42048 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4200_2 HRGMv2_4200_2_32 42043 43494 - GH1
Gene ID: HRGMv2_4200_2_22
Type: TC
Location: 28316 - 28840 (+)
Gene ID: HRGMv2_4200_2_23
Type: pfam
Location: 30046 - 31041 (-)
Gene ID: HRGMv2_4200_2_24
Type: TC
Location: 31125 - 31718 (-)
Gene ID: HRGMv2_4200_2_25
Type: TC
Location: 31733 - 33100 (-)
Gene ID: HRGMv2_4200_2_26
Type: peptidase
Location: 33129 - 34127 (-)
Gene ID: HRGMv2_4200_2_27
Type: TC
Location: 34188 - 35435 (-)
Gene ID: HRGMv2_4200_2_28
Type: CAZyme
Location: 35585 - 37813 (-)
Gene ID: HRGMv2_4200_2_29
Type: CAZyme
Location: 37814 - 39763 (-)
Gene ID: HRGMv2_4200_2_30
Type: TC
Location: 39756 - 41063 (-)
Gene ID: HRGMv2_4200_2_31
Type: TF
Location: 41233 - 42048 (+)
Gene ID: HRGMv2_4200_2_32
Type: CAZyme
Location: 42043 - 43494 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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