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Cluster: HRGMv2_4200_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4200_23 HRGMv2_4200_23_25 21522 23438 - 3.A.1.11.7
TC HRGMv2_4200_23 HRGMv2_4200_23_26 23438 24271 - 3.A.1.11.1
TC HRGMv2_4200_23 HRGMv2_4200_23_27 24271 25854 - 3.A.1.11.8
TF HRGMv2_4200_23 HRGMv2_4200_23_28 25870 26403 - HTH_3
TC HRGMv2_4200_23 HRGMv2_4200_23_29 26612 27895 - 4.A.3.2.2
TF HRGMv2_4200_23 HRGMv2_4200_23_30 28021 28806 + HTH_6
CAZyme HRGMv2_4200_23 HRGMv2_4200_23_31 28875 30263 - GH1
Gene ID: HRGMv2_4200_23_25
Type: TC
Location: 21522 - 23438 (-)
Gene ID: HRGMv2_4200_23_26
Type: TC
Location: 23438 - 24271 (-)
Gene ID: HRGMv2_4200_23_27
Type: TC
Location: 24271 - 25854 (-)
Gene ID: HRGMv2_4200_23_28
Type: TF
Location: 25870 - 26403 (-)
Gene ID: HRGMv2_4200_23_29
Type: TC
Location: 26612 - 27895 (-)
Gene ID: HRGMv2_4200_23_30
Type: TF
Location: 28021 - 28806 (+)
Gene ID: HRGMv2_4200_23_31
Type: CAZyme
Location: 28875 - 30263 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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