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Cluster: HRGMv2_4200_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4200_20 HRGMv2_4200_20_21 22766 24292 - GH77
TC HRGMv2_4200_20 HRGMv2_4200_20_22 24385 25227 - 3.A.1.1.45
TC HRGMv2_4200_20 HRGMv2_4200_20_23 25227 26078 - 3.A.1.1.45
TC HRGMv2_4200_20 HRGMv2_4200_20_24 26168 27478 - 3.A.1.1.45
pfam HRGMv2_4200_20 HRGMv2_4200_20_25 27696 28484 + YhfC
TC HRGMv2_4200_20 HRGMv2_4200_20_26 28576 29724 + 3.A.1.1.24
NULL(UNKNOWN) HRGMv2_4200_20 HRGMv2_4200_20_27 29788 30675 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4200_20 HRGMv2_4200_20_28 30861 31358 - 4.A.1.1.13
CAZyme HRGMv2_4200_20 HRGMv2_4200_20_29 31383 32882 - GH1
TC HRGMv2_4200_20 HRGMv2_4200_20_30 32904 34322 - 4.A.1.2.11
pfam HRGMv2_4200_20 HRGMv2_4200_20_31 34413 35195 - PRD | PRD
TC HRGMv2_4200_20 HRGMv2_4200_20_32 35686 36963 + 4.A.3.2.8
Gene ID: HRGMv2_4200_20_21
Type: CAZyme
Location: 22766 - 24292 (-)
Gene ID: HRGMv2_4200_20_22
Type: TC
Location: 24385 - 25227 (-)
Gene ID: HRGMv2_4200_20_23
Type: TC
Location: 25227 - 26078 (-)
Gene ID: HRGMv2_4200_20_24
Type: TC
Location: 26168 - 27478 (-)
Gene ID: HRGMv2_4200_20_25
Type: pfam
Location: 27696 - 28484 (+)
Gene ID: HRGMv2_4200_20_26
Type: TC
Location: 28576 - 29724 (+)
Gene ID: HRGMv2_4200_20_27
Type:
Location: 29788 - 30675 (+)
Gene ID: HRGMv2_4200_20_28
Type: TC
Location: 30861 - 31358 (-)
Gene ID: HRGMv2_4200_20_29
Type: CAZyme
Location: 31383 - 32882 (-)
Gene ID: HRGMv2_4200_20_30
Type: TC
Location: 32904 - 34322 (-)
Gene ID: HRGMv2_4200_20_31
Type: pfam
Location: 34413 - 35195 (-)
Gene ID: HRGMv2_4200_20_32
Type: TC
Location: 35686 - 36963 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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