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Cluster: HRGMv2_4200_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4200_12 HRGMv2_4200_12_45 42803 44032 + 2.A.49.9.3
TC HRGMv2_4200_12 HRGMv2_4200_12_46 44082 45635 + 3.A.1.5.28
TC HRGMv2_4200_12 HRGMv2_4200_12_47 45664 46638 + 3.A.1.5.25
TC HRGMv2_4200_12 HRGMv2_4200_12_48 46631 47413 + 3.A.1.5.29
TC HRGMv2_4200_12 HRGMv2_4200_12_49 47410 48396 + 3.A.1.5.1
TC HRGMv2_4200_12 HRGMv2_4200_12_50 48387 49220 + 3.A.1.5.38
TC HRGMv2_4200_12 HRGMv2_4200_12_51 49363 51951 + 3.A.1.122.14
pfam HRGMv2_4200_12 HRGMv2_4200_12_52 52249 53388 + NTP_transferase | Hexapep_GlmU
pfam HRGMv2_4200_12 HRGMv2_4200_12_53 53400 54515 + NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_4200_12 HRGMv2_4200_12_54 54515 55957 + GT5
pfam HRGMv2_4200_12 HRGMv2_4200_12_55 55963 56376 + 2-thiour_desulf
TC HRGMv2_4200_12 HRGMv2_4200_12_56 56442 56708 + 8.A.8.1.3
Gene ID: HRGMv2_4200_12_45
Type: TC
Location: 42803 - 44032 (+)
Gene ID: HRGMv2_4200_12_46
Type: TC
Location: 44082 - 45635 (+)
Gene ID: HRGMv2_4200_12_47
Type: TC
Location: 45664 - 46638 (+)
Gene ID: HRGMv2_4200_12_48
Type: TC
Location: 46631 - 47413 (+)
Gene ID: HRGMv2_4200_12_49
Type: TC
Location: 47410 - 48396 (+)
Gene ID: HRGMv2_4200_12_50
Type: TC
Location: 48387 - 49220 (+)
Gene ID: HRGMv2_4200_12_51
Type: TC
Location: 49363 - 51951 (+)
Gene ID: HRGMv2_4200_12_52
Type: pfam
Location: 52249 - 53388 (+)
Gene ID: HRGMv2_4200_12_53
Type: pfam
Location: 53400 - 54515 (+)
Gene ID: HRGMv2_4200_12_54
Type: CAZyme
Location: 54515 - 55957 (+)
Gene ID: HRGMv2_4200_12_55
Type: pfam
Location: 55963 - 56376 (+)
Gene ID: HRGMv2_4200_12_56
Type: TC
Location: 56442 - 56708 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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