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Cluster: HRGMv2_4192_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4192_7 HRGMv2_4192_7_39 41633 42295 + 3.A.2.1.5
TC HRGMv2_4192_7 HRGMv2_4192_7_40 42358 42585 + 3.A.2.1.5
pfam HRGMv2_4192_7 HRGMv2_4192_7_41 42603 43103 + ATP-synt_B
TC HRGMv2_4192_7 HRGMv2_4192_7_42 43103 43636 + 3.A.2.1.5
TC HRGMv2_4192_7 HRGMv2_4192_7_43 43646 45169 + 3.A.2.1.5
TC HRGMv2_4192_7 HRGMv2_4192_7_44 45176 46033 + 3.A.2.1.5
TC HRGMv2_4192_7 HRGMv2_4192_7_45 46045 47451 + 3.A.2.1.5
TC HRGMv2_4192_7 HRGMv2_4192_7_46 47444 47842 + 3.A.2.1.5
NULL(UNKNOWN) HRGMv2_4192_7 HRGMv2_4192_7_47 49259 49795 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4192_7 HRGMv2_4192_7_48 49773 50471 + FIVAR | FIVAR | FIVAR
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_49 51044 55498 + CBM32 | CBM32
Gene ID: HRGMv2_4192_7_39
Type: TC
Location: 41633 - 42295 (+)
Gene ID: HRGMv2_4192_7_40
Type: TC
Location: 42358 - 42585 (+)
Gene ID: HRGMv2_4192_7_41
Type: pfam
Location: 42603 - 43103 (+)
Gene ID: HRGMv2_4192_7_42
Type: TC
Location: 43103 - 43636 (+)
Gene ID: HRGMv2_4192_7_43
Type: TC
Location: 43646 - 45169 (+)
Gene ID: HRGMv2_4192_7_44
Type: TC
Location: 45176 - 46033 (+)
Gene ID: HRGMv2_4192_7_45
Type: TC
Location: 46045 - 47451 (+)
Gene ID: HRGMv2_4192_7_46
Type: TC
Location: 47444 - 47842 (+)
Gene ID: HRGMv2_4192_7_47
Type:
Location: 49259 - 49795 (+)
Gene ID: HRGMv2_4192_7_48
Type: pfam
Location: 49773 - 50471 (+)
Gene ID: HRGMv2_4192_7_49
Type: CAZyme
Location: 51044 - 55498 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4192_7_45 vegan > omnivore 1.26837 0.00524
HRGMv2_4192_7_45 vegetarian > omnivore 1.22035 0.04420

🧭 Explore Read Mapping of CGC

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