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Cluster: HRGMv2_4192_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_18 22163 24625 + GT4
pfam HRGMv2_4192_7 HRGMv2_4192_7_19 24625 25101 + Glyco_tran_28_C
CAZyme HRGMv2_4192_7 HRGMv2_4192_7_20 25112 25894 + GT2
NULL(UNKNOWN) HRGMv2_4192_7 HRGMv2_4192_7_21 25990 26697 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4192_7 HRGMv2_4192_7_22 26765 27205 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4192_7 HRGMv2_4192_7_23 27692 29044 + 4.A.2.1.5
TF HRGMv2_4192_7 HRGMv2_4192_7_24 29060 31090 + HTH_11
TC HRGMv2_4192_7 HRGMv2_4192_7_25 31094 31801 + 4.A.2.1.12
Gene ID: HRGMv2_4192_7_18
Type: CAZyme
Location: 22163 - 24625 (+)
Gene ID: HRGMv2_4192_7_19
Type: pfam
Location: 24625 - 25101 (+)
Gene ID: HRGMv2_4192_7_20
Type: CAZyme
Location: 25112 - 25894 (+)
Gene ID: HRGMv2_4192_7_21
Type:
Location: 25990 - 26697 (+)
Gene ID: HRGMv2_4192_7_22
Type:
Location: 26765 - 27205 (-)
Gene ID: HRGMv2_4192_7_23
Type: TC
Location: 27692 - 29044 (+)
Gene ID: HRGMv2_4192_7_24
Type: TF
Location: 29060 - 31090 (+)
Gene ID: HRGMv2_4192_7_25
Type: TC
Location: 31094 - 31801 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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