Cluster: HRGMv2_4192_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4192
- CGC Family ID: CGCFAM_01443
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4192_72 | HRGMv2_4192_72_1 | 1 | 3048 | - | CBM66 | GH32 |
| NULL(UNKNOWN) | HRGMv2_4192_72 | HRGMv2_4192_72_2 | 3192 | 3461 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4192_72 | HRGMv2_4192_72_3 | 3476 | 4306 | - | 4.A.6.1.15 |
| TC | HRGMv2_4192_72 | HRGMv2_4192_72_4 | 4308 | 5156 | - | 4.A.6.1.16 |
| TC | HRGMv2_4192_72 | HRGMv2_4192_72_5 | 5177 | 5674 | - | 4.A.6.1.9 |
| TC | HRGMv2_4192_72 | HRGMv2_4192_72_6 | 5687 | 6112 | - | 4.A.6.1.16 |
Gene ID: HRGMv2_4192_72_1
Type: CAZyme
Location: 1 - 3048 (-)
Type: CAZyme
Location: 1 - 3048 (-)
Gene ID: HRGMv2_4192_72_2
Type:
Location: 3192 - 3461 (-)
Type:
Location: 3192 - 3461 (-)
Gene ID: HRGMv2_4192_72_3
Type: TC
Location: 3476 - 4306 (-)
Type: TC
Location: 3476 - 4306 (-)
Gene ID: HRGMv2_4192_72_4
Type: TC
Location: 4308 - 5156 (-)
Type: TC
Location: 4308 - 5156 (-)
Gene ID: HRGMv2_4192_72_5
Type: TC
Location: 5177 - 5674 (-)
Type: TC
Location: 5177 - 5674 (-)
Gene ID: HRGMv2_4192_72_6
Type: TC
Location: 5687 - 6112 (-)
Type: TC
Location: 5687 - 6112 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4192_72_5 | vegan > omnivore | 18.36056 | 0.00524 |
| HRGMv2_4192_72_5 | vegetarian > omnivore | 15.47141 | 0.04420 |