Cluster: HRGMv2_4192_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_4192
- CGC Family ID: CGCFAM_00015
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4192_65 | HRGMv2_4192_65_2 | 86 | 1621 | - | 2.A.66.1.40 |
| pfam | HRGMv2_4192_65 | HRGMv2_4192_65_3 | 1608 | 2681 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_4 | 2856 | 3821 | - | GT2 |
| pfam | HRGMv2_4192_65 | HRGMv2_4192_65_5 | 3821 | 4981 | - | Glyphos_transf |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_6 | 4974 | 5972 | - | GT2 |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_7 | 5975 | 6970 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4192_65 | HRGMv2_4192_65_8 | 6957 | 8123 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_9 | 8156 | 9199 | - | GT2 |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_10 | 9199 | 10323 | - | GT4 |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_11 | 10320 | 11504 | - | GT5 |
| TC | HRGMv2_4192_65 | HRGMv2_4192_65_12 | 11504 | 12547 | - | 9.B.18.2.1 |
| CAZyme | HRGMv2_4192_65 | HRGMv2_4192_65_13 | 12544 | 13728 | - | GT4 |
| TC | HRGMv2_4192_65 | HRGMv2_4192_65_14 | 13725 | 14339 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_4192_65_2
Type: TC
Location: 86 - 1621 (-)
Type: TC
Location: 86 - 1621 (-)
Gene ID: HRGMv2_4192_65_3
Type: pfam
Location: 1608 - 2681 (-)
Type: pfam
Location: 1608 - 2681 (-)
Gene ID: HRGMv2_4192_65_4
Type: CAZyme
Location: 2856 - 3821 (-)
Type: CAZyme
Location: 2856 - 3821 (-)
Gene ID: HRGMv2_4192_65_5
Type: pfam
Location: 3821 - 4981 (-)
Type: pfam
Location: 3821 - 4981 (-)
Gene ID: HRGMv2_4192_65_6
Type: CAZyme
Location: 4974 - 5972 (-)
Type: CAZyme
Location: 4974 - 5972 (-)
Gene ID: HRGMv2_4192_65_7
Type: CAZyme
Location: 5975 - 6970 (-)
Type: CAZyme
Location: 5975 - 6970 (-)
Gene ID: HRGMv2_4192_65_8
Type:
Location: 6957 - 8123 (-)
Type:
Location: 6957 - 8123 (-)
Gene ID: HRGMv2_4192_65_9
Type: CAZyme
Location: 8156 - 9199 (-)
Type: CAZyme
Location: 8156 - 9199 (-)
Gene ID: HRGMv2_4192_65_10
Type: CAZyme
Location: 9199 - 10323 (-)
Type: CAZyme
Location: 9199 - 10323 (-)
Gene ID: HRGMv2_4192_65_11
Type: CAZyme
Location: 10320 - 11504 (-)
Type: CAZyme
Location: 10320 - 11504 (-)
Gene ID: HRGMv2_4192_65_12
Type: TC
Location: 11504 - 12547 (-)
Type: TC
Location: 11504 - 12547 (-)
Gene ID: HRGMv2_4192_65_13
Type: CAZyme
Location: 12544 - 13728 (-)
Type: CAZyme
Location: 12544 - 13728 (-)
Gene ID: HRGMv2_4192_65_14
Type: TC
Location: 13725 - 14339 (-)
Type: TC
Location: 13725 - 14339 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.