Cluster: HRGMv2_4192_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4192
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4192_51 | HRGMv2_4192_51_5 | 3849 | 4670 | + | 3.A.1.104.1 |
| TC | HRGMv2_4192_51 | HRGMv2_4192_51_6 | 4680 | 5507 | + | 3.A.1.104.2 |
| pfam | HRGMv2_4192_51 | HRGMv2_4192_51_7 | 5516 | 5902 | + | CTP_transf_like |
| CAZyme | HRGMv2_4192_51 | HRGMv2_4192_51_8 | 5903 | 8119 | + | GT2 |
Gene ID: HRGMv2_4192_51_5
Type: TC
Location: 3849 - 4670 (+)
Type: TC
Location: 3849 - 4670 (+)
Gene ID: HRGMv2_4192_51_6
Type: TC
Location: 4680 - 5507 (+)
Type: TC
Location: 4680 - 5507 (+)
Gene ID: HRGMv2_4192_51_7
Type: pfam
Location: 5516 - 5902 (+)
Type: pfam
Location: 5516 - 5902 (+)
Gene ID: HRGMv2_4192_51_8
Type: CAZyme
Location: 5903 - 8119 (+)
Type: CAZyme
Location: 5903 - 8119 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4192_51_5 | vegan > omnivore | 2.95736 | 0.00524 |
| HRGMv2_4192_51_7 | vegan > omnivore | 2.24210 | 0.00524 |