Cluster: HRGMv2_4192_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4192
- CGC Family ID: CGCFAM_02068
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4192_50 | HRGMv2_4192_50_12 | 11167 | 11652 | - | 4.A.1.1.14 |
| TC | HRGMv2_4192_50 | HRGMv2_4192_50_13 | 11903 | 13360 | + | 4.A.1.1.7 |
| pfam | HRGMv2_4192_50 | HRGMv2_4192_50_14 | 13376 | 14206 | + | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_4192_50 | HRGMv2_4192_50_15 | 14490 | 15959 | + | GH84 |
| CAZyme | HRGMv2_4192_50 | HRGMv2_4192_50_16 | 15905 | 18742 | + | CBM32 | CBM32 | CBM32 |
Gene ID: HRGMv2_4192_50_12
Type: TC
Location: 11167 - 11652 (-)
Type: TC
Location: 11167 - 11652 (-)
Gene ID: HRGMv2_4192_50_13
Type: TC
Location: 11903 - 13360 (+)
Type: TC
Location: 11903 - 13360 (+)
Gene ID: HRGMv2_4192_50_14
Type: pfam
Location: 13376 - 14206 (+)
Type: pfam
Location: 13376 - 14206 (+)
Gene ID: HRGMv2_4192_50_15
Type: CAZyme
Location: 14490 - 15959 (+)
Type: CAZyme
Location: 14490 - 15959 (+)
Gene ID: HRGMv2_4192_50_16
Type: CAZyme
Location: 15905 - 18742 (+)
Type: CAZyme
Location: 15905 - 18742 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.