Cluster: HRGMv2_4192_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_4192
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4192_35 | HRGMv2_4192_35_14 | 8035 | 8646 | + | 9.B.18.1.3 |
| pfam | HRGMv2_4192_35 | HRGMv2_4192_35_15 | 8646 | 9524 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_16 | 9524 | 10672 | + | GT4 |
| pfam | HRGMv2_4192_35 | HRGMv2_4192_35_17 | 10691 | 11218 | + | Hexapep |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_18 | 11215 | 12300 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_4192_35 | HRGMv2_4192_35_19 | 12372 | 13646 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_20 | 13684 | 14766 | + | GT4 |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_21 | 14981 | 15964 | + | GT2 |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_22 | 15967 | 17052 | + | GT4 |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_23 | 17111 | 18097 | + | GT2 |
| CAZyme | HRGMv2_4192_35 | HRGMv2_4192_35_24 | 18472 | 19458 | + | GT2 |
| TC | HRGMv2_4192_35 | HRGMv2_4192_35_25 | 19455 | 20897 | + | 2.A.66.2.23 |
Gene ID: HRGMv2_4192_35_14
Type: TC
Location: 8035 - 8646 (+)
Type: TC
Location: 8035 - 8646 (+)
Gene ID: HRGMv2_4192_35_15
Type: pfam
Location: 8646 - 9524 (+)
Type: pfam
Location: 8646 - 9524 (+)
Gene ID: HRGMv2_4192_35_16
Type: CAZyme
Location: 9524 - 10672 (+)
Type: CAZyme
Location: 9524 - 10672 (+)
Gene ID: HRGMv2_4192_35_17
Type: pfam
Location: 10691 - 11218 (+)
Type: pfam
Location: 10691 - 11218 (+)
Gene ID: HRGMv2_4192_35_18
Type: CAZyme
Location: 11215 - 12300 (+)
Type: CAZyme
Location: 11215 - 12300 (+)
Gene ID: HRGMv2_4192_35_19
Type:
Location: 12372 - 13646 (+)
Type:
Location: 12372 - 13646 (+)
Gene ID: HRGMv2_4192_35_20
Type: CAZyme
Location: 13684 - 14766 (+)
Type: CAZyme
Location: 13684 - 14766 (+)
Gene ID: HRGMv2_4192_35_21
Type: CAZyme
Location: 14981 - 15964 (+)
Type: CAZyme
Location: 14981 - 15964 (+)
Gene ID: HRGMv2_4192_35_22
Type: CAZyme
Location: 15967 - 17052 (+)
Type: CAZyme
Location: 15967 - 17052 (+)
Gene ID: HRGMv2_4192_35_23
Type: CAZyme
Location: 17111 - 18097 (+)
Type: CAZyme
Location: 17111 - 18097 (+)
Gene ID: HRGMv2_4192_35_24
Type: CAZyme
Location: 18472 - 19458 (+)
Type: CAZyme
Location: 18472 - 19458 (+)
Gene ID: HRGMv2_4192_35_25
Type: TC
Location: 19455 - 20897 (+)
Type: TC
Location: 19455 - 20897 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.