Cluster: HRGMv2_4192_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4192
- CGC Family ID: CGCFAM_02247
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4192_23 | HRGMv2_4192_23_5 | 4007 | 6190 | + | 3.A.7.7.1 |
| NULL(UNKNOWN) | HRGMv2_4192_23 | HRGMv2_4192_23_6 | 6625 | 6777 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4192_23 | HRGMv2_4192_23_7 | 6805 | 6918 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4192_23 | HRGMv2_4192_23_8 | 8121 | 8951 | - | CE6 |
| pfam | HRGMv2_4192_23 | HRGMv2_4192_23_9 | 9308 | 10339 | - | RecA | ATPase | Rad51 | RecA_C |
| pfam | HRGMv2_4192_23 | HRGMv2_4192_23_10 | 10379 | 10837 | - | CinA |
| TC | HRGMv2_4192_23 | HRGMv2_4192_23_11 | 10837 | 11430 | - | 4.F.1.1.8 |
Gene ID: HRGMv2_4192_23_5
Type: TC
Location: 4007 - 6190 (+)
Type: TC
Location: 4007 - 6190 (+)
Gene ID: HRGMv2_4192_23_6
Type:
Location: 6625 - 6777 (-)
Type:
Location: 6625 - 6777 (-)
Gene ID: HRGMv2_4192_23_7
Type:
Location: 6805 - 6918 (-)
Type:
Location: 6805 - 6918 (-)
Gene ID: HRGMv2_4192_23_8
Type: CAZyme
Location: 8121 - 8951 (-)
Type: CAZyme
Location: 8121 - 8951 (-)
Gene ID: HRGMv2_4192_23_9
Type: pfam
Location: 9308 - 10339 (-)
Type: pfam
Location: 9308 - 10339 (-)
Gene ID: HRGMv2_4192_23_10
Type: pfam
Location: 10379 - 10837 (-)
Type: pfam
Location: 10379 - 10837 (-)
Gene ID: HRGMv2_4192_23_11
Type: TC
Location: 10837 - 11430 (-)
Type: TC
Location: 10837 - 11430 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Thomasclavelia
Species
Thomasclavelia sp021770925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.