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Cluster: HRGMv2_4189_CGC84

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_77 HRGMv2_4189_77_9 4542 5369 + 3.A.1.3.27
TC HRGMv2_4189_77 HRGMv2_4189_77_10 5371 6189 + 3.A.1.3.24
TC HRGMv2_4189_77 HRGMv2_4189_77_11 6186 6971 + 3.A.1.3.4
TC HRGMv2_4189_77 HRGMv2_4189_77_12 6961 7644 + 3.A.1.3.18
pfam HRGMv2_4189_77 HRGMv2_4189_77_13 7707 7934 - YccJ
CAZyme HRGMv2_4189_77 HRGMv2_4189_77_14 7951 8556 - AA6
Gene ID: HRGMv2_4189_77_9
Type: TC
Location: 4542 - 5369 (+)
Gene ID: HRGMv2_4189_77_10
Type: TC
Location: 5371 - 6189 (+)
Gene ID: HRGMv2_4189_77_11
Type: TC
Location: 6186 - 6971 (+)
Gene ID: HRGMv2_4189_77_12
Type: TC
Location: 6961 - 7644 (+)
Gene ID: HRGMv2_4189_77_13
Type: pfam
Location: 7707 - 7934 (-)
Gene ID: HRGMv2_4189_77_14
Type: CAZyme
Location: 7951 - 8556 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_77_9 vegetarian > omnivore 1.77581 0.04484

🧭 Explore Read Mapping of CGC

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