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Cluster: HRGMv2_4189_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_60 HRGMv2_4189_60_1 3 518 + 3.A.1.1.11
TC HRGMv2_4189_60 HRGMv2_4189_60_2 533 1819 + 3.A.1.1.11
CAZyme HRGMv2_4189_60 HRGMv2_4189_60_3 1889 3016 + PL22 | PL22_1
TC HRGMv2_4189_60 HRGMv2_4189_60_4 3104 4162 - 2.A.1.1.2
pfam HRGMv2_4189_60 HRGMv2_4189_60_5 4285 5046 - adh_short | KR | adh_short_C2
pfam HRGMv2_4189_60 HRGMv2_4189_60_6 5110 5946 - KduI
CAZyme HRGMv2_4189_60 HRGMv2_4189_60_7 6416 7591 + PL22 | PL22
TC HRGMv2_4189_60 HRGMv2_4189_60_8 8263 8979 - 1.B.35.1.5
pfam HRGMv2_4189_60 HRGMv2_4189_60_9 9459 10646 - Thiolase_N | ketoacyl-synt | Thiolase_C
TF HRGMv2_4189_60 HRGMv2_4189_60_10 10758 11627 - HTH_1
TC HRGMv2_4189_60 HRGMv2_4189_60_11 11722 12183 + 2.A.117.1.3
TC HRGMv2_4189_60 HRGMv2_4189_60_12 12295 13524 + 2.A.42.2.5
pfam HRGMv2_4189_60 HRGMv2_4189_60_13 13598 15256 - DAO | Mqo
TC HRGMv2_4189_60 HRGMv2_4189_60_14 15449 16219 - 3.A.1.16.4
STP HRGMv2_4189_60 HRGMv2_4189_60_15 16219 17190 - SBP_bac_3
TC HRGMv2_4189_60 HRGMv2_4189_60_16 17242 18072 - 3.A.1.17.1
sulfatase HRGMv2_4189_60 HRGMv2_4189_60_17 18082 19428 - S2
TC HRGMv2_4189_60 HRGMv2_4189_60_18 19572 20891 - 2.A.49.9.2
Gene ID: HRGMv2_4189_60_1
Type: TC
Location: 3 - 518 (+)
Gene ID: HRGMv2_4189_60_2
Type: TC
Location: 533 - 1819 (+)
Gene ID: HRGMv2_4189_60_3
Type: CAZyme
Location: 1889 - 3016 (+)
Gene ID: HRGMv2_4189_60_4
Type: TC
Location: 3104 - 4162 (-)
Gene ID: HRGMv2_4189_60_5
Type: pfam
Location: 4285 - 5046 (-)
Gene ID: HRGMv2_4189_60_6
Type: pfam
Location: 5110 - 5946 (-)
Gene ID: HRGMv2_4189_60_7
Type: CAZyme
Location: 6416 - 7591 (+)
Gene ID: HRGMv2_4189_60_8
Type: TC
Location: 8263 - 8979 (-)
Gene ID: HRGMv2_4189_60_9
Type: pfam
Location: 9459 - 10646 (-)
Gene ID: HRGMv2_4189_60_10
Type: TF
Location: 10758 - 11627 (-)
Gene ID: HRGMv2_4189_60_11
Type: TC
Location: 11722 - 12183 (+)
Gene ID: HRGMv2_4189_60_12
Type: TC
Location: 12295 - 13524 (+)
Gene ID: HRGMv2_4189_60_13
Type: pfam
Location: 13598 - 15256 (-)
Gene ID: HRGMv2_4189_60_14
Type: TC
Location: 15449 - 16219 (-)
Gene ID: HRGMv2_4189_60_15
Type: STP
Location: 16219 - 17190 (-)
Gene ID: HRGMv2_4189_60_16
Type: TC
Location: 17242 - 18072 (-)
Gene ID: HRGMv2_4189_60_17
Type: sulfatase
Location: 18082 - 19428 (-)
Gene ID: HRGMv2_4189_60_18
Type: TC
Location: 19572 - 20891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_60_1 vegetarian > omnivore 3.37275 0.04484
HRGMv2_4189_60_2 vegetarian > omnivore 1.74449 0.04280

🧭 Explore Read Mapping of CGC

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