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Cluster: HRGMv2_4189_CGC74

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_54 HRGMv2_4189_54_3 1458 1886 + 9.B.27.3.1
pfam HRGMv2_4189_54 HRGMv2_4189_54_4 1968 3512 + Glu_cys_ligase
pfam HRGMv2_4189_54 HRGMv2_4189_54_5 3773 4288 + LuxS
TC HRGMv2_4189_54 HRGMv2_4189_54_6 4595 5953 + 2.A.2.3.4
CAZyme HRGMv2_4189_54 HRGMv2_4189_54_7 5983 8766 + GH3
TC HRGMv2_4189_54 HRGMv2_4189_54_8 8928 10466 - 2.A.1.3.2
TC HRGMv2_4189_54 HRGMv2_4189_54_9 10483 11655 - 8.A.1.1.1
TF HRGMv2_4189_54 HRGMv2_4189_54_10 11767 12297 - MarR
TC HRGMv2_4189_54 HRGMv2_4189_54_11 12434 13615 - 2.A.1.36.3
TC HRGMv2_4189_54 HRGMv2_4189_54_12 13792 14793 - 3.A.1.12.1
TC HRGMv2_4189_54 HRGMv2_4189_54_13 14857 15918 - 3.A.1.12.1
TC HRGMv2_4189_54 HRGMv2_4189_54_14 15911 17116 - 3.A.1.12.1
Gene ID: HRGMv2_4189_54_3
Type: TC
Location: 1458 - 1886 (+)
Gene ID: HRGMv2_4189_54_4
Type: pfam
Location: 1968 - 3512 (+)
Gene ID: HRGMv2_4189_54_5
Type: pfam
Location: 3773 - 4288 (+)
Gene ID: HRGMv2_4189_54_6
Type: TC
Location: 4595 - 5953 (+)
Gene ID: HRGMv2_4189_54_7
Type: CAZyme
Location: 5983 - 8766 (+)
Gene ID: HRGMv2_4189_54_8
Type: TC
Location: 8928 - 10466 (-)
Gene ID: HRGMv2_4189_54_9
Type: TC
Location: 10483 - 11655 (-)
Gene ID: HRGMv2_4189_54_10
Type: TF
Location: 11767 - 12297 (-)
Gene ID: HRGMv2_4189_54_11
Type: TC
Location: 12434 - 13615 (-)
Gene ID: HRGMv2_4189_54_12
Type: TC
Location: 13792 - 14793 (-)
Gene ID: HRGMv2_4189_54_13
Type: TC
Location: 14857 - 15918 (-)
Gene ID: HRGMv2_4189_54_14
Type: TC
Location: 15911 - 17116 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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