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Cluster: HRGMv2_4189_CGC72

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_47 HRGMv2_4189_47_20 22877 23023 + 9.B.13.1.1
TC HRGMv2_4189_47 HRGMv2_4189_47_21 23163 23480 + 2.A.7.1.4
pfam HRGMv2_4189_47 HRGMv2_4189_47_22 23598 23954 - Fumarate_red_D
pfam HRGMv2_4189_47 HRGMv2_4189_47_23 23965 24360 - Fumarate_red_C
TC HRGMv2_4189_47 HRGMv2_4189_47_24 24371 25105 - 3.D.10.1.3
TC HRGMv2_4189_47 HRGMv2_4189_47_25 25098 26888 - 3.D.10.1.6
pfam HRGMv2_4189_47 HRGMv2_4189_47_26 27200 28177 + tRNA-synt_2
TC HRGMv2_4189_47 HRGMv2_4189_47_27 28403 29905 + 2.A.3.7.5
CAZyme HRGMv2_4189_47 HRGMv2_4189_47_28 29982 32075 - GH36
TC HRGMv2_4189_47 HRGMv2_4189_47_29 32097 33335 - 2.A.1.5.4
TF HRGMv2_4189_47 HRGMv2_4189_47_30 33583 34581 + LacI
TC HRGMv2_4189_47 HRGMv2_4189_47_31 34701 38024 - 1.A.23.1.3
Gene ID: HRGMv2_4189_47_20
Type: TC
Location: 22877 - 23023 (+)
Gene ID: HRGMv2_4189_47_21
Type: TC
Location: 23163 - 23480 (+)
Gene ID: HRGMv2_4189_47_22
Type: pfam
Location: 23598 - 23954 (-)
Gene ID: HRGMv2_4189_47_23
Type: pfam
Location: 23965 - 24360 (-)
Gene ID: HRGMv2_4189_47_24
Type: TC
Location: 24371 - 25105 (-)
Gene ID: HRGMv2_4189_47_25
Type: TC
Location: 25098 - 26888 (-)
Gene ID: HRGMv2_4189_47_26
Type: pfam
Location: 27200 - 28177 (+)
Gene ID: HRGMv2_4189_47_27
Type: TC
Location: 28403 - 29905 (+)
Gene ID: HRGMv2_4189_47_28
Type: CAZyme
Location: 29982 - 32075 (-)
Gene ID: HRGMv2_4189_47_29
Type: TC
Location: 32097 - 33335 (-)
Gene ID: HRGMv2_4189_47_30
Type: TF
Location: 33583 - 34581 (+)
Gene ID: HRGMv2_4189_47_31
Type: TC
Location: 34701 - 38024 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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