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Cluster: HRGMv2_4189_CGC71

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_46 HRGMv2_4189_46_28 29031 31079 + 9.B.174.1.2
TC HRGMv2_4189_46 HRGMv2_4189_46_29 31273 32157 + 9.B.1.1.6
pfam HRGMv2_4189_46 HRGMv2_4189_46_30 32210 32638 - PgaD
CAZyme HRGMv2_4189_46 HRGMv2_4189_46_31 32638 33966 - GT2
CAZyme HRGMv2_4189_46 HRGMv2_4189_46_32 33959 35974 - CE4 | GH153
TC HRGMv2_4189_46 HRGMv2_4189_46_33 35983 38430 - 1.B.55.1.1
TF HRGMv2_4189_46 HRGMv2_4189_46_34 39045 39662 + GerE
TC HRGMv2_4189_46 HRGMv2_4189_46_35 39659 41032 - 2.A.1.3.17
Gene ID: HRGMv2_4189_46_28
Type: TC
Location: 29031 - 31079 (+)
Gene ID: HRGMv2_4189_46_29
Type: TC
Location: 31273 - 32157 (+)
Gene ID: HRGMv2_4189_46_30
Type: pfam
Location: 32210 - 32638 (-)
Gene ID: HRGMv2_4189_46_31
Type: CAZyme
Location: 32638 - 33966 (-)
Gene ID: HRGMv2_4189_46_32
Type: CAZyme
Location: 33959 - 35974 (-)
Gene ID: HRGMv2_4189_46_33
Type: TC
Location: 35983 - 38430 (-)
Gene ID: HRGMv2_4189_46_34
Type: TF
Location: 39045 - 39662 (+)
Gene ID: HRGMv2_4189_46_35
Type: TC
Location: 39659 - 41032 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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