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Cluster: HRGMv2_4189_CGC70

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_45 HRGMv2_4189_45_23 21772 23340 - 2.A.2.5.1
CAZyme HRGMv2_4189_45 HRGMv2_4189_45_24 23573 24712 - GH105
TC HRGMv2_4189_45 HRGMv2_4189_45_25 24717 26303 - 2.A.2.5.2
pfam HRGMv2_4189_45 HRGMv2_4189_45_26 26573 26968 - FlhE
TC HRGMv2_4189_45 HRGMv2_4189_45_27 26968 29049 - 3.A.6.2.1
TC HRGMv2_4189_45 HRGMv2_4189_45_28 29042 30193 - 3.A.6.2.1
pfam HRGMv2_4189_45 HRGMv2_4189_45_29 30832 31407 + Fimbrial
pfam HRGMv2_4189_45 HRGMv2_4189_45_30 31483 32178 + PapD_N | PapD_C
TC HRGMv2_4189_45 HRGMv2_4189_45_31 32181 34721 + 1.B.11.3.6
Gene ID: HRGMv2_4189_45_23
Type: TC
Location: 21772 - 23340 (-)
Gene ID: HRGMv2_4189_45_24
Type: CAZyme
Location: 23573 - 24712 (-)
Gene ID: HRGMv2_4189_45_25
Type: TC
Location: 24717 - 26303 (-)
Gene ID: HRGMv2_4189_45_26
Type: pfam
Location: 26573 - 26968 (-)
Gene ID: HRGMv2_4189_45_27
Type: TC
Location: 26968 - 29049 (-)
Gene ID: HRGMv2_4189_45_28
Type: TC
Location: 29042 - 30193 (-)
Gene ID: HRGMv2_4189_45_29
Type: pfam
Location: 30832 - 31407 (+)
Gene ID: HRGMv2_4189_45_30
Type: pfam
Location: 31483 - 32178 (+)
Gene ID: HRGMv2_4189_45_31
Type: TC
Location: 32181 - 34721 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_45_25 vegetarian > omnivore 2.19771 0.02922

🧭 Explore Read Mapping of CGC

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