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Cluster: HRGMv2_4189_CGC65

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_38 HRGMv2_4189_38_29 29265 31241 + 4.A.2.1.2
pfam HRGMv2_4189_38 HRGMv2_4189_38_30 31294 32451 + Mannitol_dh | Mannitol_dh_C
pfam HRGMv2_4189_38 HRGMv2_4189_38_31 32513 33175 + MtlR
CAZyme HRGMv2_4189_38 HRGMv2_4189_38_32 33373 34656 + CE8
pfam HRGMv2_4189_38 HRGMv2_4189_38_33 34788 35783 - Lactonase
pfam HRGMv2_4189_38 HRGMv2_4189_38_34 35901 36719 + Hydrolase | S6PP | S6PP | Hydrolase_3
TC HRGMv2_4189_38 HRGMv2_4189_38_35 36720 37778 - 3.A.1.8.1
TC HRGMv2_4189_38 HRGMv2_4189_38_36 37782 38471 - 3.A.1.8.1
TC HRGMv2_4189_38 HRGMv2_4189_38_37 38471 39244 - 3.A.1.8.1
TC HRGMv2_4189_38 HRGMv2_4189_38_38 39422 39571 - 2.A.6.2.49
TF HRGMv2_4189_38 HRGMv2_4189_38_39 39702 40490 + HTH_1
TC HRGMv2_4189_38 HRGMv2_4189_38_40 40558 42030 + 3.A.1.26.3
Gene ID: HRGMv2_4189_38_29
Type: TC
Location: 29265 - 31241 (+)
Gene ID: HRGMv2_4189_38_30
Type: pfam
Location: 31294 - 32451 (+)
Gene ID: HRGMv2_4189_38_31
Type: pfam
Location: 32513 - 33175 (+)
Gene ID: HRGMv2_4189_38_32
Type: CAZyme
Location: 33373 - 34656 (+)
Gene ID: HRGMv2_4189_38_33
Type: pfam
Location: 34788 - 35783 (-)
Gene ID: HRGMv2_4189_38_34
Type: pfam
Location: 35901 - 36719 (+)
Gene ID: HRGMv2_4189_38_35
Type: TC
Location: 36720 - 37778 (-)
Gene ID: HRGMv2_4189_38_36
Type: TC
Location: 37782 - 38471 (-)
Gene ID: HRGMv2_4189_38_37
Type: TC
Location: 38471 - 39244 (-)
Gene ID: HRGMv2_4189_38_38
Type: TC
Location: 39422 - 39571 (-)
Gene ID: HRGMv2_4189_38_39
Type: TF
Location: 39702 - 40490 (+)
Gene ID: HRGMv2_4189_38_40
Type: TC
Location: 40558 - 42030 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_38_38 vegetarian > omnivore 4.26605 0.04484

🧭 Explore Read Mapping of CGC

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