dbCAN Logo

Cluster: HRGMv2_4189_CGC64

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4189_37 HRGMv2_4189_37_38 42231 43655 - GH1
TC HRGMv2_4189_37 HRGMv2_4189_37_39 43676 45133 - 4.A.1.2.3
TF HRGMv2_4189_37 HRGMv2_4189_37_40 45396 46409 + LacI
TC HRGMv2_4189_37 HRGMv2_4189_37_41 46554 47099 + 5.A.3.11.1
TC HRGMv2_4189_37 HRGMv2_4189_37_42 47136 49286 + 3.D.1.9.2
pfam HRGMv2_4189_37 HRGMv2_4189_37_43 49292 51517 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC HRGMv2_4189_37 HRGMv2_4189_37_44 51529 52545 + 2.A.52.1.1
Gene ID: HRGMv2_4189_37_38
Type: CAZyme
Location: 42231 - 43655 (-)
Gene ID: HRGMv2_4189_37_39
Type: TC
Location: 43676 - 45133 (-)
Gene ID: HRGMv2_4189_37_40
Type: TF
Location: 45396 - 46409 (+)
Gene ID: HRGMv2_4189_37_41
Type: TC
Location: 46554 - 47099 (+)
Gene ID: HRGMv2_4189_37_42
Type: TC
Location: 47136 - 49286 (+)
Gene ID: HRGMv2_4189_37_43
Type: pfam
Location: 49292 - 51517 (+)
Gene ID: HRGMv2_4189_37_44
Type: TC
Location: 51529 - 52545 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_37_44 vegetarian > omnivore 1.63246 0.04484

🧭 Explore Read Mapping of CGC

← Back to Cluster List