Cluster: HRGMv2_4189_CGC63
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4189
- CGC Family ID: CGCFAM_00123
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4189_36 | HRGMv2_4189_36_1 | 49 | 2025 | + | CBM48 | GH13_11 |
| pfam | HRGMv2_4189_36 | HRGMv2_4189_36_2 | 2106 | 3401 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_4189_36 | HRGMv2_4189_36_3 | 3401 | 4834 | + | GT5 |
| CAZyme | HRGMv2_4189_36 | HRGMv2_4189_36_4 | 4852 | 7299 | + | GT35 |
| pfam | HRGMv2_4189_36 | HRGMv2_4189_36_5 | 7345 | 8853 | - | DAO | DAO_C |
| STP | HRGMv2_4189_36 | HRGMv2_4189_36_6 | 9058 | 9387 | + | Rhodanese |
| TC | HRGMv2_4189_36 | HRGMv2_4189_36_7 | 9516 | 10346 | + | 9.B.104.1.1 |
| TF | HRGMv2_4189_36 | HRGMv2_4189_36_8 | 10364 | 11122 | + | HTH_DeoR |
| TF | HRGMv2_4189_36 | HRGMv2_4189_36_9 | 11195 | 13900 | - | GerE |
| CAZyme | HRGMv2_4189_36 | HRGMv2_4189_36_10 | 14524 | 16914 | + | GT35 |
| CAZyme | HRGMv2_4189_36 | HRGMv2_4189_36_11 | 16925 | 19009 | + | GH77 |
| TC | HRGMv2_4189_36 | HRGMv2_4189_36_12 | 19177 | 20493 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_4189_36_1
Type: CAZyme
Location: 49 - 2025 (+)
Type: CAZyme
Location: 49 - 2025 (+)
Gene ID: HRGMv2_4189_36_2
Type: pfam
Location: 2106 - 3401 (+)
Type: pfam
Location: 2106 - 3401 (+)
Gene ID: HRGMv2_4189_36_3
Type: CAZyme
Location: 3401 - 4834 (+)
Type: CAZyme
Location: 3401 - 4834 (+)
Gene ID: HRGMv2_4189_36_4
Type: CAZyme
Location: 4852 - 7299 (+)
Type: CAZyme
Location: 4852 - 7299 (+)
Gene ID: HRGMv2_4189_36_5
Type: pfam
Location: 7345 - 8853 (-)
Type: pfam
Location: 7345 - 8853 (-)
Gene ID: HRGMv2_4189_36_6
Type: STP
Location: 9058 - 9387 (+)
Type: STP
Location: 9058 - 9387 (+)
Gene ID: HRGMv2_4189_36_7
Type: TC
Location: 9516 - 10346 (+)
Type: TC
Location: 9516 - 10346 (+)
Gene ID: HRGMv2_4189_36_8
Type: TF
Location: 10364 - 11122 (+)
Type: TF
Location: 10364 - 11122 (+)
Gene ID: HRGMv2_4189_36_9
Type: TF
Location: 11195 - 13900 (-)
Type: TF
Location: 11195 - 13900 (-)
Gene ID: HRGMv2_4189_36_10
Type: CAZyme
Location: 14524 - 16914 (+)
Type: CAZyme
Location: 14524 - 16914 (+)
Gene ID: HRGMv2_4189_36_11
Type: CAZyme
Location: 16925 - 19009 (+)
Type: CAZyme
Location: 16925 - 19009 (+)
Gene ID: HRGMv2_4189_36_12
Type: TC
Location: 19177 - 20493 (-)
Type: TC
Location: 19177 - 20493 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4189_36_6 | vegetarian > omnivore | 2.25246 | 0.04484 |