Cluster: HRGMv2_4189_CGC62
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4189
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4189_35 | HRGMv2_4189_35_12 | 12957 | 14147 | - | GH88 |
| TC | HRGMv2_4189_35 | HRGMv2_4189_35_13 | 14173 | 15441 | - | 2.A.1.5.4 |
| CAZyme | HRGMv2_4189_35 | HRGMv2_4189_35_14 | 15538 | 17298 | - | GH154 |
| TF | HRGMv2_4189_35 | HRGMv2_4189_35_15 | 17529 | 18437 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4189_35 | HRGMv2_4189_35_16 | 18388 | 19677 | - | 2.A.56.1.5 |
| pfam | HRGMv2_4189_35 | HRGMv2_4189_35_17 | 19690 | 20238 | - | DctQ |
| TC | HRGMv2_4189_35 | HRGMv2_4189_35_18 | 20296 | 21273 | - | 2.A.56.1.2 |
Gene ID: HRGMv2_4189_35_12
Type: CAZyme
Location: 12957 - 14147 (-)
Type: CAZyme
Location: 12957 - 14147 (-)
Gene ID: HRGMv2_4189_35_13
Type: TC
Location: 14173 - 15441 (-)
Type: TC
Location: 14173 - 15441 (-)
Gene ID: HRGMv2_4189_35_14
Type: CAZyme
Location: 15538 - 17298 (-)
Type: CAZyme
Location: 15538 - 17298 (-)
Gene ID: HRGMv2_4189_35_15
Type: TF
Location: 17529 - 18437 (+)
Type: TF
Location: 17529 - 18437 (+)
Gene ID: HRGMv2_4189_35_16
Type: TC
Location: 18388 - 19677 (-)
Type: TC
Location: 18388 - 19677 (-)
Gene ID: HRGMv2_4189_35_17
Type: pfam
Location: 19690 - 20238 (-)
Type: pfam
Location: 19690 - 20238 (-)
Gene ID: HRGMv2_4189_35_18
Type: TC
Location: 20296 - 21273 (-)
Type: TC
Location: 20296 - 21273 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.