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Cluster: HRGMv2_4189_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_34 HRGMv2_4189_34_3 2752 4317 - 1.B.52.2.1
TC HRGMv2_4189_34 HRGMv2_4189_34_4 4401 5402 - 3.A.1.2.25
TC HRGMv2_4189_34 HRGMv2_4189_34_5 5389 6411 - 3.A.1.2.25
TC HRGMv2_4189_34 HRGMv2_4189_34_6 6425 7927 - 3.A.1.2.25
TC HRGMv2_4189_34 HRGMv2_4189_34_7 8180 9136 - 3.A.1.2.25
sulfatase HRGMv2_4189_34 HRGMv2_4189_34_8 9539 10066 + S1_4
pfam HRGMv2_4189_34 HRGMv2_4189_34_9 10220 10564 - GGACT
TC HRGMv2_4189_34 HRGMv2_4189_34_10 10567 14343 - 9.B.22.1.2
TC HRGMv2_4189_34 HRGMv2_4189_34_11 14340 16073 - 1.B.33.2.4
pfam HRGMv2_4189_34 HRGMv2_4189_34_12 16344 16979 + PMSR
TF HRGMv2_4189_34 HRGMv2_4189_34_13 17023 18087 - LacI
CAZyme HRGMv2_4189_34 HRGMv2_4189_34_14 18473 19984 + GH51_1
TC HRGMv2_4189_34 HRGMv2_4189_34_15 20076 21323 + 3.A.1.1.4
TC HRGMv2_4189_34 HRGMv2_4189_34_16 21372 22256 + 3.A.1.1.4
TC HRGMv2_4189_34 HRGMv2_4189_34_17 22253 23068 + 3.A.1.1.4
TC HRGMv2_4189_34 HRGMv2_4189_34_18 23087 24166 + 3.A.1.1.4
TC HRGMv2_4189_34 HRGMv2_4189_34_19 24355 24501 - 3.B.1.1.1
TF HRGMv2_4189_34 HRGMv2_4189_34_20 24839 25933 - LacI
pfam HRGMv2_4189_34 HRGMv2_4189_34_21 26124 27278 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme HRGMv2_4189_34 HRGMv2_4189_34_22 27298 28476 + GH179
pfam HRGMv2_4189_34 HRGMv2_4189_34_23 28479 29546 + GFO_IDH_MocA_C | GFO_IDH_MocA_C3
pfam HRGMv2_4189_34 HRGMv2_4189_34_24 29559 30581 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4189_34 HRGMv2_4189_34_25 30670 32214 + 2.A.2.5.2
TC HRGMv2_4189_34 HRGMv2_4189_34_26 32358 33701 + 9.A.40.2.2
TC HRGMv2_4189_34 HRGMv2_4189_34_27 33894 35117 + 2.A.1.5.2
CAZyme HRGMv2_4189_34 HRGMv2_4189_34_28 35135 37144 + GH42
Gene ID: HRGMv2_4189_34_3
Type: TC
Location: 2752 - 4317 (-)
Gene ID: HRGMv2_4189_34_4
Type: TC
Location: 4401 - 5402 (-)
Gene ID: HRGMv2_4189_34_5
Type: TC
Location: 5389 - 6411 (-)
Gene ID: HRGMv2_4189_34_6
Type: TC
Location: 6425 - 7927 (-)
Gene ID: HRGMv2_4189_34_7
Type: TC
Location: 8180 - 9136 (-)
Gene ID: HRGMv2_4189_34_8
Type: sulfatase
Location: 9539 - 10066 (+)
Gene ID: HRGMv2_4189_34_9
Type: pfam
Location: 10220 - 10564 (-)
Gene ID: HRGMv2_4189_34_10
Type: TC
Location: 10567 - 14343 (-)
Gene ID: HRGMv2_4189_34_11
Type: TC
Location: 14340 - 16073 (-)
Gene ID: HRGMv2_4189_34_12
Type: pfam
Location: 16344 - 16979 (+)
Gene ID: HRGMv2_4189_34_13
Type: TF
Location: 17023 - 18087 (-)
Gene ID: HRGMv2_4189_34_14
Type: CAZyme
Location: 18473 - 19984 (+)
Gene ID: HRGMv2_4189_34_15
Type: TC
Location: 20076 - 21323 (+)
Gene ID: HRGMv2_4189_34_16
Type: TC
Location: 21372 - 22256 (+)
Gene ID: HRGMv2_4189_34_17
Type: TC
Location: 22253 - 23068 (+)
Gene ID: HRGMv2_4189_34_18
Type: TC
Location: 23087 - 24166 (+)
Gene ID: HRGMv2_4189_34_19
Type: TC
Location: 24355 - 24501 (-)
Gene ID: HRGMv2_4189_34_20
Type: TF
Location: 24839 - 25933 (-)
Gene ID: HRGMv2_4189_34_21
Type: pfam
Location: 26124 - 27278 (+)
Gene ID: HRGMv2_4189_34_22
Type: CAZyme
Location: 27298 - 28476 (+)
Gene ID: HRGMv2_4189_34_23
Type: pfam
Location: 28479 - 29546 (+)
Gene ID: HRGMv2_4189_34_24
Type: pfam
Location: 29559 - 30581 (+)
Gene ID: HRGMv2_4189_34_25
Type: TC
Location: 30670 - 32214 (+)
Gene ID: HRGMv2_4189_34_26
Type: TC
Location: 32358 - 33701 (+)
Gene ID: HRGMv2_4189_34_27
Type: TC
Location: 33894 - 35117 (+)
Gene ID: HRGMv2_4189_34_28
Type: CAZyme
Location: 35135 - 37144 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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