Cluster: HRGMv2_4189_CGC53
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4189
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4189_25 | HRGMv2_4189_25_10 | 8837 | 9499 | - | 1.C.113.1.10 |
| pfam | HRGMv2_4189_25 | HRGMv2_4189_25_11 | 9658 | 9972 | - | ASCH |
| TF | HRGMv2_4189_25 | HRGMv2_4189_25_12 | 10024 | 10752 | + | HTH_6 |
| CAZyme | HRGMv2_4189_25 | HRGMv2_4189_25_13 | 10873 | 12306 | + | GH1 |
Gene ID: HRGMv2_4189_25_10
Type: TC
Location: 8837 - 9499 (-)
Type: TC
Location: 8837 - 9499 (-)
Gene ID: HRGMv2_4189_25_11
Type: pfam
Location: 9658 - 9972 (-)
Type: pfam
Location: 9658 - 9972 (-)
Gene ID: HRGMv2_4189_25_12
Type: TF
Location: 10024 - 10752 (+)
Type: TF
Location: 10024 - 10752 (+)
Gene ID: HRGMv2_4189_25_13
Type: CAZyme
Location: 10873 - 12306 (+)
Type: CAZyme
Location: 10873 - 12306 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4189_25_12 | vegetarian > omnivore | 2.50911 | 0.01829 |
| HRGMv2_4189_25_12 | vegetarian > vegan | 2.05902 | 0.01920 |