Cluster: HRGMv2_4189_CGC50
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4189
- CGC Family ID: CGCFAM_00144
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4189_21 | HRGMv2_4189_21_34 | 35103 | 36083 | + | GT2 |
| pfam | HRGMv2_4189_21 | HRGMv2_4189_21_35 | 36083 | 38068 | + | Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| pfam | HRGMv2_4189_21 | HRGMv2_4189_21_36 | 38065 | 38967 | + | Polysacc_deac_1 |
| CAZyme | HRGMv2_4189_21 | HRGMv2_4189_21_37 | 38964 | 40619 | + | GT83 |
| TC | HRGMv2_4189_21 | HRGMv2_4189_21_38 | 40616 | 40954 | + | 2.A.7.22.2 |
| TC | HRGMv2_4189_21 | HRGMv2_4189_21_39 | 40954 | 41343 | + | 2.A.7.22.2 |
| TC | HRGMv2_4189_21 | HRGMv2_4189_21_40 | 41423 | 42613 | + | 2.A.1.46.7 |
| pfam | HRGMv2_4189_21 | HRGMv2_4189_21_41 | 42647 | 43204 | - | DcrB |
| TC | HRGMv2_4189_21 | HRGMv2_4189_21_42 | 43278 | 43943 | - | 2.A.88.8.6 |
| pfam | HRGMv2_4189_21 | HRGMv2_4189_21_43 | 44124 | 44369 | + | TusA |
| sulfatase | HRGMv2_4189_21 | HRGMv2_4189_21_44 | 44601 | 46445 | + | S1_14 |
| TC | HRGMv2_4189_21 | HRGMv2_4189_21_45 | 46572 | 48773 | - | 3.A.3.6.2 |
Gene ID: HRGMv2_4189_21_34
Type: CAZyme
Location: 35103 - 36083 (+)
Type: CAZyme
Location: 35103 - 36083 (+)
Gene ID: HRGMv2_4189_21_35
Type: pfam
Location: 36083 - 38068 (+)
Type: pfam
Location: 36083 - 38068 (+)
Gene ID: HRGMv2_4189_21_36
Type: pfam
Location: 38065 - 38967 (+)
Type: pfam
Location: 38065 - 38967 (+)
Gene ID: HRGMv2_4189_21_37
Type: CAZyme
Location: 38964 - 40619 (+)
Type: CAZyme
Location: 38964 - 40619 (+)
Gene ID: HRGMv2_4189_21_38
Type: TC
Location: 40616 - 40954 (+)
Type: TC
Location: 40616 - 40954 (+)
Gene ID: HRGMv2_4189_21_39
Type: TC
Location: 40954 - 41343 (+)
Type: TC
Location: 40954 - 41343 (+)
Gene ID: HRGMv2_4189_21_40
Type: TC
Location: 41423 - 42613 (+)
Type: TC
Location: 41423 - 42613 (+)
Gene ID: HRGMv2_4189_21_41
Type: pfam
Location: 42647 - 43204 (-)
Type: pfam
Location: 42647 - 43204 (-)
Gene ID: HRGMv2_4189_21_42
Type: TC
Location: 43278 - 43943 (-)
Type: TC
Location: 43278 - 43943 (-)
Gene ID: HRGMv2_4189_21_43
Type: pfam
Location: 44124 - 44369 (+)
Type: pfam
Location: 44124 - 44369 (+)
Gene ID: HRGMv2_4189_21_44
Type: sulfatase
Location: 44601 - 46445 (+)
Type: sulfatase
Location: 44601 - 46445 (+)
Gene ID: HRGMv2_4189_21_45
Type: TC
Location: 46572 - 48773 (-)
Type: TC
Location: 46572 - 48773 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.