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Cluster: HRGMv2_4189_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_20 HRGMv2_4189_20_3 2138 3532 + 2.A.2.3.4
CAZyme HRGMv2_4189_20 HRGMv2_4189_20_4 3544 5862 + GH31_3
TC HRGMv2_4189_20 HRGMv2_4189_20_5 6012 7061 - 2.A.1.7.11
TF HRGMv2_4189_20 HRGMv2_4189_20_6 7150 7896 + HTH_6
CAZyme HRGMv2_4189_20 HRGMv2_4189_20_7 7897 9276 - GH4
TC HRGMv2_4189_20 HRGMv2_4189_20_8 9291 10862 - 4.A.1.1.8
pfam HRGMv2_4189_20 HRGMv2_4189_20_9 11142 12818 - AsmA
TC HRGMv2_4189_20 HRGMv2_4189_20_10 12941 14332 - 2.A.40.4.2
TC HRGMv2_4189_20 HRGMv2_4189_20_11 14616 15818 + 2.A.27.1.1
pfam HRGMv2_4189_20 HRGMv2_4189_20_12 15907 17415 - FGGY_N | FGGY_C
TC HRGMv2_4189_20 HRGMv2_4189_20_13 17437 18285 - 1.A.8.1.1
pfam HRGMv2_4189_20 HRGMv2_4189_20_14 18712 18951 + ZapB
TC HRGMv2_4189_20 HRGMv2_4189_20_15 19159 20148 + 3.A.1.6.1
Gene ID: HRGMv2_4189_20_3
Type: TC
Location: 2138 - 3532 (+)
Gene ID: HRGMv2_4189_20_4
Type: CAZyme
Location: 3544 - 5862 (+)
Gene ID: HRGMv2_4189_20_5
Type: TC
Location: 6012 - 7061 (-)
Gene ID: HRGMv2_4189_20_6
Type: TF
Location: 7150 - 7896 (+)
Gene ID: HRGMv2_4189_20_7
Type: CAZyme
Location: 7897 - 9276 (-)
Gene ID: HRGMv2_4189_20_8
Type: TC
Location: 9291 - 10862 (-)
Gene ID: HRGMv2_4189_20_9
Type: pfam
Location: 11142 - 12818 (-)
Gene ID: HRGMv2_4189_20_10
Type: TC
Location: 12941 - 14332 (-)
Gene ID: HRGMv2_4189_20_11
Type: TC
Location: 14616 - 15818 (+)
Gene ID: HRGMv2_4189_20_12
Type: pfam
Location: 15907 - 17415 (-)
Gene ID: HRGMv2_4189_20_13
Type: TC
Location: 17437 - 18285 (-)
Gene ID: HRGMv2_4189_20_14
Type: pfam
Location: 18712 - 18951 (+)
Gene ID: HRGMv2_4189_20_15
Type: TC
Location: 19159 - 20148 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_20_4 vegetarian > omnivore 1.06251 0.04484

🧭 Explore Read Mapping of CGC

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