Cluster: HRGMv2_4189_CGC46

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_4189_18	HRGMv2_4189_18_64	64456	66168	-	PL4_4
CAZyme	HRGMv2_4189_18	HRGMv2_4189_18_65	66501	67670	+	PL22 \| PL22_1
TC	HRGMv2_4189_18	HRGMv2_4189_18_66	67667	68962	+	3.A.1.1.11
CAZyme	HRGMv2_4189_18	HRGMv2_4189_18_67	68972	70081	+	GH105
TF	HRGMv2_4189_18	HRGMv2_4189_18_68	70102	70950	-	HTH_AraC
TC	HRGMv2_4189_18	HRGMv2_4189_18_69	71147	72037	+	3.A.1.1.11
TC	HRGMv2_4189_18	HRGMv2_4189_18_70	72030	72932	+	3.A.1.1.11
TC	HRGMv2_4189_18	HRGMv2_4189_18_71	72945	74072	+	3.A.1.1.11

Gene ID: HRGMv2_4189_18_64
Type: CAZyme
Location: 64456 - 66168 (-)

Gene ID: HRGMv2_4189_18_65
Type: CAZyme
Location: 66501 - 67670 (+)

Gene ID: HRGMv2_4189_18_66
Type: TC
Location: 67667 - 68962 (+)

Gene ID: HRGMv2_4189_18_67
Type: CAZyme
Location: 68972 - 70081 (+)

Gene ID: HRGMv2_4189_18_68
Type: TF
Location: 70102 - 70950 (-)

Gene ID: HRGMv2_4189_18_69
Type: TC
Location: 71147 - 72037 (+)

Gene ID: HRGMv2_4189_18_70
Type: TC
Location: 72030 - 72932 (+)

Gene ID: HRGMv2_4189_18_71
Type: TC
Location: 72945 - 74072 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_4189_18_70	vegetarian > omnivore	1.37794	0.04484
HRGMv2_4189_18_71	vegan > omnivore	1.28626	0.02945
HRGMv2_4189_18_71	vegetarian > omnivore	1.19608	0.03578