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Cluster: HRGMv2_4189_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_18 HRGMv2_4189_18_21 19895 20215 + 4.A.3.2.7
TC HRGMv2_4189_18 HRGMv2_4189_18_22 20295 21653 + 4.A.3.2.7
TC HRGMv2_4189_18 HRGMv2_4189_18_23 21710 22057 + 4.A.3.2.7
TF HRGMv2_4189_18 HRGMv2_4189_18_24 22083 22907 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4189_18 HRGMv2_4189_18_25 23012 24358 + GH4
pfam HRGMv2_4189_18 HRGMv2_4189_18_26 24370 25125 + YdjC
pfam HRGMv2_4189_18 HRGMv2_4189_18_27 25259 25498 + CedA
TC HRGMv2_4189_18 HRGMv2_4189_18_28 25564 26955 - 2.A.23.1.8
Gene ID: HRGMv2_4189_18_21
Type: TC
Location: 19895 - 20215 (+)
Gene ID: HRGMv2_4189_18_22
Type: TC
Location: 20295 - 21653 (+)
Gene ID: HRGMv2_4189_18_23
Type: TC
Location: 21710 - 22057 (+)
Gene ID: HRGMv2_4189_18_24
Type: TF
Location: 22083 - 22907 (+)
Gene ID: HRGMv2_4189_18_25
Type: CAZyme
Location: 23012 - 24358 (+)
Gene ID: HRGMv2_4189_18_26
Type: pfam
Location: 24370 - 25125 (+)
Gene ID: HRGMv2_4189_18_27
Type: pfam
Location: 25259 - 25498 (+)
Gene ID: HRGMv2_4189_18_28
Type: TC
Location: 25564 - 26955 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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