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Cluster: HRGMv2_4189_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_14 HRGMv2_4189_14_49 52630 53244 + 2.A.115.2.6
TC HRGMv2_4189_14 HRGMv2_4189_14_50 53256 54128 - 2.A.113.1.1
pfam HRGMv2_4189_14 HRGMv2_4189_14_51 54234 54506 + Trns_repr_metal
STP HRGMv2_4189_14 HRGMv2_4189_14_52 54487 56064 - EAL
TC HRGMv2_4189_14 HRGMv2_4189_14_53 56160 56831 - 3.A.1.24.5
TC HRGMv2_4189_14 HRGMv2_4189_14_54 56816 57607 - 3.A.1.24.1
TC HRGMv2_4189_14 HRGMv2_4189_14_55 57604 58410 - 3.A.1.24.5
pfam HRGMv2_4189_14 HRGMv2_4189_14_56 58436 59467 - 2OG-FeII_Oxy | DIOX_N
TC HRGMv2_4189_14 HRGMv2_4189_14_57 59698 60807 - 3.A.1.1.4
TC HRGMv2_4189_14 HRGMv2_4189_14_58 61154 62386 + 3.A.1.1.2
TC HRGMv2_4189_14 HRGMv2_4189_14_59 62440 63747 + 3.A.1.1.2
TC HRGMv2_4189_14 HRGMv2_4189_14_60 63757 64608 + 3.A.1.1.2
CAZyme HRGMv2_4189_14 HRGMv2_4189_14_61 64613 65815 + GH53
CAZyme HRGMv2_4189_14 HRGMv2_4189_14_62 65844 67901 + GH42
TC HRGMv2_4189_14 HRGMv2_4189_14_63 67971 68288 + 4.A.1.1.1
TC HRGMv2_4189_14 HRGMv2_4189_14_64 68552 69817 - 1.B.3.1.1
Gene ID: HRGMv2_4189_14_49
Type: TC
Location: 52630 - 53244 (+)
Gene ID: HRGMv2_4189_14_50
Type: TC
Location: 53256 - 54128 (-)
Gene ID: HRGMv2_4189_14_51
Type: pfam
Location: 54234 - 54506 (+)
Gene ID: HRGMv2_4189_14_52
Type: STP
Location: 54487 - 56064 (-)
Gene ID: HRGMv2_4189_14_53
Type: TC
Location: 56160 - 56831 (-)
Gene ID: HRGMv2_4189_14_54
Type: TC
Location: 56816 - 57607 (-)
Gene ID: HRGMv2_4189_14_55
Type: TC
Location: 57604 - 58410 (-)
Gene ID: HRGMv2_4189_14_56
Type: pfam
Location: 58436 - 59467 (-)
Gene ID: HRGMv2_4189_14_57
Type: TC
Location: 59698 - 60807 (-)
Gene ID: HRGMv2_4189_14_58
Type: TC
Location: 61154 - 62386 (+)
Gene ID: HRGMv2_4189_14_59
Type: TC
Location: 62440 - 63747 (+)
Gene ID: HRGMv2_4189_14_60
Type: TC
Location: 63757 - 64608 (+)
Gene ID: HRGMv2_4189_14_61
Type: CAZyme
Location: 64613 - 65815 (+)
Gene ID: HRGMv2_4189_14_62
Type: CAZyme
Location: 65844 - 67901 (+)
Gene ID: HRGMv2_4189_14_63
Type: TC
Location: 67971 - 68288 (+)
Gene ID: HRGMv2_4189_14_64
Type: TC
Location: 68552 - 69817 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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