Cluster: HRGMv2_4189_CGC36
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4189
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4189_12 | HRGMv2_4189_12_12 | 16839 | 17558 | + | GT51 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_13 | 17668 | 17940 | - | 8.A.8.1.5 |
| pfam | HRGMv2_4189_12 | HRGMv2_4189_12_14 | 17937 | 18791 | - | RapZ-like_N | PapZ_C |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_15 | 18825 | 19313 | - | 4.A.2.1.7 |
| pfam | HRGMv2_4189_12 | HRGMv2_4189_12_16 | 19369 | 19656 | - | Ribosomal_S30AE |
| pfam | HRGMv2_4189_12 | HRGMv2_4189_12_17 | 19679 | 21112 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_18 | 21158 | 21883 | - | 1.B.42.1.2 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_19 | 21890 | 22444 | - | 1.B.42.1.2 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_20 | 22413 | 22988 | - | 1.B.42.1.2 |
| pfam | HRGMv2_4189_12 | HRGMv2_4189_12_21 | 22985 | 23551 | - | Hydrolase_3 |
| STP | HRGMv2_4189_12 | HRGMv2_4189_12_22 | 23567 | 24553 | - | CBS | CBS | SIS |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_23 | 24568 | 25542 | - | 2.A.19.5.1 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_24 | 25731 | 26543 | + | 3.A.1.27.3 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_25 | 26551 | 27333 | + | 3.A.1.27.3 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_26 | 27338 | 27892 | + | 3.A.1.27.3 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_27 | 27911 | 28546 | + | 3.A.1.27.3 |
| TC | HRGMv2_4189_12 | HRGMv2_4189_12_28 | 28546 | 28836 | + | 3.A.1.27.3 |
Gene ID: HRGMv2_4189_12_12
Type: CAZyme
Location: 16839 - 17558 (+)
Type: CAZyme
Location: 16839 - 17558 (+)
Gene ID: HRGMv2_4189_12_13
Type: TC
Location: 17668 - 17940 (-)
Type: TC
Location: 17668 - 17940 (-)
Gene ID: HRGMv2_4189_12_14
Type: pfam
Location: 17937 - 18791 (-)
Type: pfam
Location: 17937 - 18791 (-)
Gene ID: HRGMv2_4189_12_15
Type: TC
Location: 18825 - 19313 (-)
Type: TC
Location: 18825 - 19313 (-)
Gene ID: HRGMv2_4189_12_16
Type: pfam
Location: 19369 - 19656 (-)
Type: pfam
Location: 19369 - 19656 (-)
Gene ID: HRGMv2_4189_12_17
Type: pfam
Location: 19679 - 21112 (-)
Type: pfam
Location: 19679 - 21112 (-)
Gene ID: HRGMv2_4189_12_18
Type: TC
Location: 21158 - 21883 (-)
Type: TC
Location: 21158 - 21883 (-)
Gene ID: HRGMv2_4189_12_19
Type: TC
Location: 21890 - 22444 (-)
Type: TC
Location: 21890 - 22444 (-)
Gene ID: HRGMv2_4189_12_20
Type: TC
Location: 22413 - 22988 (-)
Type: TC
Location: 22413 - 22988 (-)
Gene ID: HRGMv2_4189_12_21
Type: pfam
Location: 22985 - 23551 (-)
Type: pfam
Location: 22985 - 23551 (-)
Gene ID: HRGMv2_4189_12_22
Type: STP
Location: 23567 - 24553 (-)
Type: STP
Location: 23567 - 24553 (-)
Gene ID: HRGMv2_4189_12_23
Type: TC
Location: 24568 - 25542 (-)
Type: TC
Location: 24568 - 25542 (-)
Gene ID: HRGMv2_4189_12_24
Type: TC
Location: 25731 - 26543 (+)
Type: TC
Location: 25731 - 26543 (+)
Gene ID: HRGMv2_4189_12_25
Type: TC
Location: 26551 - 27333 (+)
Type: TC
Location: 26551 - 27333 (+)
Gene ID: HRGMv2_4189_12_26
Type: TC
Location: 27338 - 27892 (+)
Type: TC
Location: 27338 - 27892 (+)
Gene ID: HRGMv2_4189_12_27
Type: TC
Location: 27911 - 28546 (+)
Type: TC
Location: 27911 - 28546 (+)
Gene ID: HRGMv2_4189_12_28
Type: TC
Location: 28546 - 28836 (+)
Type: TC
Location: 28546 - 28836 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kluyvera
Species
Kluyvera georgiana
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4189_12_24 | vegetarian > omnivore | 1.43224 | 0.04484 |