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Cluster: HRGMv2_4189_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_11 HRGMv2_4189_11_19 20299 21258 - 3.A.1.20.3
TC HRGMv2_4189_11 HRGMv2_4189_11_20 21255 21956 - 3.A.1.1.16
pfam HRGMv2_4189_11 HRGMv2_4189_11_21 22171 22755 + Flavin_Reduct
CAZyme HRGMv2_4189_11 HRGMv2_4189_11_22 23008 24090 + GH105
NULL(UNKNOWN) HRGMv2_4189_11 HRGMv2_4189_11_23 24120 26603 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4189_11 HRGMv2_4189_11_24 26640 27986 + 2.A.1.14.2
TF HRGMv2_4189_11 HRGMv2_4189_11_25 28012 29052 - LacI
TF HRGMv2_4189_11 HRGMv2_4189_11_26 29056 29877 - HTH_AraC
CAZyme HRGMv2_4189_11 HRGMv2_4189_11_27 30079 31650 + GH78
TC HRGMv2_4189_11 HRGMv2_4189_11_28 31673 33052 + 2.A.2.3.2
Gene ID: HRGMv2_4189_11_19
Type: TC
Location: 20299 - 21258 (-)
Gene ID: HRGMv2_4189_11_20
Type: TC
Location: 21255 - 21956 (-)
Gene ID: HRGMv2_4189_11_21
Type: pfam
Location: 22171 - 22755 (+)
Gene ID: HRGMv2_4189_11_22
Type: CAZyme
Location: 23008 - 24090 (+)
Gene ID: HRGMv2_4189_11_23
Type:
Location: 24120 - 26603 (+)
Gene ID: HRGMv2_4189_11_24
Type: TC
Location: 26640 - 27986 (+)
Gene ID: HRGMv2_4189_11_25
Type: TF
Location: 28012 - 29052 (-)
Gene ID: HRGMv2_4189_11_26
Type: TF
Location: 29056 - 29877 (-)
Gene ID: HRGMv2_4189_11_27
Type: CAZyme
Location: 30079 - 31650 (+)
Gene ID: HRGMv2_4189_11_28
Type: TC
Location: 31673 - 33052 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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