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Cluster: HRGMv2_4189_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_8 HRGMv2_4189_8_78 85037 86338 + 2.A.1.14.2
CAZyme HRGMv2_4189_8 HRGMv2_4189_8_79 86353 88719 + GH31_2
TC HRGMv2_4189_8 HRGMv2_4189_8_80 88850 90442 - 3.A.1.121.4
peptidase HRGMv2_4189_8 HRGMv2_4189_8_81 90595 91581 + C82.UPB
TF HRGMv2_4189_8 HRGMv2_4189_8_82 91628 92344 - GntR
CAZyme HRGMv2_4189_8 HRGMv2_4189_8_83 92360 93736 - GH1
pfam HRGMv2_4189_8 HRGMv2_4189_8_84 94301 95125 + KdgM | KdgM
pfam HRGMv2_4189_8 HRGMv2_4189_8_85 95156 95911 + KdgM
CAZyme HRGMv2_4189_8 HRGMv2_4189_8_86 95933 97513 + CE12
CAZyme HRGMv2_4189_8 HRGMv2_4189_8_87 97524 98609 + CE8
CAZyme HRGMv2_4189_8 HRGMv2_4189_8_88 98619 100334 + PL2_1
TC HRGMv2_4189_8 HRGMv2_4189_8_89 100411 101523 - 2.A.45.2.5
Gene ID: HRGMv2_4189_8_78
Type: TC
Location: 85037 - 86338 (+)
Gene ID: HRGMv2_4189_8_79
Type: CAZyme
Location: 86353 - 88719 (+)
Gene ID: HRGMv2_4189_8_80
Type: TC
Location: 88850 - 90442 (-)
Gene ID: HRGMv2_4189_8_81
Type: peptidase
Location: 90595 - 91581 (+)
Gene ID: HRGMv2_4189_8_82
Type: TF
Location: 91628 - 92344 (-)
Gene ID: HRGMv2_4189_8_83
Type: CAZyme
Location: 92360 - 93736 (-)
Gene ID: HRGMv2_4189_8_84
Type: pfam
Location: 94301 - 95125 (+)
Gene ID: HRGMv2_4189_8_85
Type: pfam
Location: 95156 - 95911 (+)
Gene ID: HRGMv2_4189_8_86
Type: CAZyme
Location: 95933 - 97513 (+)
Gene ID: HRGMv2_4189_8_87
Type: CAZyme
Location: 97524 - 98609 (+)
Gene ID: HRGMv2_4189_8_88
Type: CAZyme
Location: 98619 - 100334 (+)
Gene ID: HRGMv2_4189_8_89
Type: TC
Location: 100411 - 101523 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_8_78 vegetarian > omnivore 1.04946 0.04484
HRGMv2_4189_8_79 vegetarian > omnivore 1.27976 0.03578

🧭 Explore Read Mapping of CGC

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