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Cluster: HRGMv2_4189_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_7 HRGMv2_4189_7_38 36818 37657 + 2.A.7.31.3
TC HRGMv2_4189_7 HRGMv2_4189_7_39 37731 39017 + 2.A.1.2.9
TF HRGMv2_4189_7 HRGMv2_4189_7_40 39115 40041 - HTH_1
TC HRGMv2_4189_7 HRGMv2_4189_7_41 40271 41608 + 2.A.8.1.5
STP HRGMv2_4189_7 HRGMv2_4189_7_42 41626 42948 + PALP
pfam HRGMv2_4189_7 HRGMv2_4189_7_43 43149 44420 + Sugar_tr | MFS_1
CAZyme HRGMv2_4189_7 HRGMv2_4189_7_44 44420 45715 + PL42
TC HRGMv2_4189_7 HRGMv2_4189_7_45 45761 47086 - 4.A.3.2.2
CAZyme HRGMv2_4189_7 HRGMv2_4189_7_46 47088 48476 - GH1
TC HRGMv2_4189_7 HRGMv2_4189_7_47 48488 48805 - 4.A.3.2.9
Gene ID: HRGMv2_4189_7_38
Type: TC
Location: 36818 - 37657 (+)
Gene ID: HRGMv2_4189_7_39
Type: TC
Location: 37731 - 39017 (+)
Gene ID: HRGMv2_4189_7_40
Type: TF
Location: 39115 - 40041 (-)
Gene ID: HRGMv2_4189_7_41
Type: TC
Location: 40271 - 41608 (+)
Gene ID: HRGMv2_4189_7_42
Type: STP
Location: 41626 - 42948 (+)
Gene ID: HRGMv2_4189_7_43
Type: pfam
Location: 43149 - 44420 (+)
Gene ID: HRGMv2_4189_7_44
Type: CAZyme
Location: 44420 - 45715 (+)
Gene ID: HRGMv2_4189_7_45
Type: TC
Location: 45761 - 47086 (-)
Gene ID: HRGMv2_4189_7_46
Type: CAZyme
Location: 47088 - 48476 (-)
Gene ID: HRGMv2_4189_7_47
Type: TC
Location: 48488 - 48805 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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