dbCAN Logo

Cluster: HRGMv2_4189_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_5 HRGMv2_4189_5_25 23928 25661 - 2.A.36.6.11
peptidase HRGMv2_4189_5 HRGMv2_4189_5_26 25757 26671 - S66.UPW
CAZyme HRGMv2_4189_5 HRGMv2_4189_5_27 26765 27376 + GH23
pfam HRGMv2_4189_5 HRGMv2_4189_5_28 27377 28108 - PilZ | PilZN
TC HRGMv2_4189_5 HRGMv2_4189_5_29 28377 28631 + 1.E.43.1.1
TC HRGMv2_4189_5 HRGMv2_4189_5_30 28779 30887 + 1.B.14.1.2
TC HRGMv2_4189_5 HRGMv2_4189_5_31 30998 32389 - 2.A.1.14.9
TF HRGMv2_4189_5 HRGMv2_4189_5_32 32645 33118 + MarR
NULL(UNKNOWN) HRGMv2_4189_5 HRGMv2_4189_5_33 33011 33265 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4189_5 HRGMv2_4189_5_34 33453 34574 + 3.A.9.1.1
Gene ID: HRGMv2_4189_5_25
Type: TC
Location: 23928 - 25661 (-)
Gene ID: HRGMv2_4189_5_26
Type: peptidase
Location: 25757 - 26671 (-)
Gene ID: HRGMv2_4189_5_27
Type: CAZyme
Location: 26765 - 27376 (+)
Gene ID: HRGMv2_4189_5_28
Type: pfam
Location: 27377 - 28108 (-)
Gene ID: HRGMv2_4189_5_29
Type: TC
Location: 28377 - 28631 (+)
Gene ID: HRGMv2_4189_5_30
Type: TC
Location: 28779 - 30887 (+)
Gene ID: HRGMv2_4189_5_31
Type: TC
Location: 30998 - 32389 (-)
Gene ID: HRGMv2_4189_5_32
Type: TF
Location: 32645 - 33118 (+)
Gene ID: HRGMv2_4189_5_33
Type:
Location: 33011 - 33265 (-)
Gene ID: HRGMv2_4189_5_34
Type: TC
Location: 33453 - 34574 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List