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Cluster: HRGMv2_4189_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4189_4 HRGMv2_4189_4_57 48291 49427 + 3.A.1.11.1
TC HRGMv2_4189_4 HRGMv2_4189_4_58 49411 50268 + 3.A.1.11.1
TC HRGMv2_4189_4 HRGMv2_4189_4_59 50265 51056 + 3.A.1.11.1
TC HRGMv2_4189_4 HRGMv2_4189_4_60 51072 52118 + 3.A.1.11.1
TF HRGMv2_4189_4 HRGMv2_4189_4_61 52146 52850 - GntR
TC HRGMv2_4189_4 HRGMv2_4189_4_62 53111 54388 + 4.A.3.2.3
CAZyme HRGMv2_4189_4 HRGMv2_4189_4_63 54385 56607 + GH3
pfam HRGMv2_4189_4 HRGMv2_4189_4_64 56648 57469 - SIR2
STP HRGMv2_4189_4 HRGMv2_4189_4_65 57482 58396 - Glucokinase
TC HRGMv2_4189_4 HRGMv2_4189_4_66 58453 59697 - 3.A.1.125.1
TC HRGMv2_4189_4 HRGMv2_4189_4_67 59697 60398 - 3.A.1.125.1
TC HRGMv2_4189_4 HRGMv2_4189_4_68 60391 61590 - 3.A.1.125.1
pfam HRGMv2_4189_4 HRGMv2_4189_4_69 61764 62381 + DUF2238
TC HRGMv2_4189_4 HRGMv2_4189_4_70 62431 62685 - 2.A.123.2.6
TC HRGMv2_4189_4 HRGMv2_4189_4_71 62688 64118 - 2.A.2.1.1
CAZyme HRGMv2_4189_4 HRGMv2_4189_4_72 64206 65558 - GH4
TF HRGMv2_4189_4 HRGMv2_4189_4_73 65831 66757 + HTH_AraC | HTH_AraC
pfam HRGMv2_4189_4 HRGMv2_4189_4_74 66875 70321 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter | MFD_D3
TC HRGMv2_4189_4 HRGMv2_4189_4_75 70569 72746 + 1.B.14.1.1
TC HRGMv2_4189_4 HRGMv2_4189_4_76 72956 74389 - 4.A.1.1.1
Gene ID: HRGMv2_4189_4_57
Type: TC
Location: 48291 - 49427 (+)
Gene ID: HRGMv2_4189_4_58
Type: TC
Location: 49411 - 50268 (+)
Gene ID: HRGMv2_4189_4_59
Type: TC
Location: 50265 - 51056 (+)
Gene ID: HRGMv2_4189_4_60
Type: TC
Location: 51072 - 52118 (+)
Gene ID: HRGMv2_4189_4_61
Type: TF
Location: 52146 - 52850 (-)
Gene ID: HRGMv2_4189_4_62
Type: TC
Location: 53111 - 54388 (+)
Gene ID: HRGMv2_4189_4_63
Type: CAZyme
Location: 54385 - 56607 (+)
Gene ID: HRGMv2_4189_4_64
Type: pfam
Location: 56648 - 57469 (-)
Gene ID: HRGMv2_4189_4_65
Type: STP
Location: 57482 - 58396 (-)
Gene ID: HRGMv2_4189_4_66
Type: TC
Location: 58453 - 59697 (-)
Gene ID: HRGMv2_4189_4_67
Type: TC
Location: 59697 - 60398 (-)
Gene ID: HRGMv2_4189_4_68
Type: TC
Location: 60391 - 61590 (-)
Gene ID: HRGMv2_4189_4_69
Type: pfam
Location: 61764 - 62381 (+)
Gene ID: HRGMv2_4189_4_70
Type: TC
Location: 62431 - 62685 (-)
Gene ID: HRGMv2_4189_4_71
Type: TC
Location: 62688 - 64118 (-)
Gene ID: HRGMv2_4189_4_72
Type: CAZyme
Location: 64206 - 65558 (-)
Gene ID: HRGMv2_4189_4_73
Type: TF
Location: 65831 - 66757 (+)
Gene ID: HRGMv2_4189_4_74
Type: pfam
Location: 66875 - 70321 (+)
Gene ID: HRGMv2_4189_4_75
Type: TC
Location: 70569 - 72746 (+)
Gene ID: HRGMv2_4189_4_76
Type: TC
Location: 72956 - 74389 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4189_4_66 vegetarian > omnivore 1.58012 0.04484

🧭 Explore Read Mapping of CGC

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