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Cluster: HRGMv2_4189_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4189_2 HRGMv2_4189_2_107 122623 125160 + GT51
TC HRGMv2_4189_2 HRGMv2_4189_2_108 125387 127621 + 1.B.14.1.2
TC HRGMv2_4189_2 HRGMv2_4189_2_109 127658 128467 + 3.A.1.14.3
TC HRGMv2_4189_2 HRGMv2_4189_2_110 128467 129357 + 3.A.1.14.3
TC HRGMv2_4189_2 HRGMv2_4189_2_111 129354 131336 + 3.A.1.14.3
pfam HRGMv2_4189_2 HRGMv2_4189_2_112 131433 132713 - Aminotran_3
TC HRGMv2_4189_2 HRGMv2_4189_2_113 132895 134313 + 2.A.49.5.5
pfam HRGMv2_4189_2 HRGMv2_4189_2_114 134396 134740 + Fe-S_biosyn
TC HRGMv2_4189_2 HRGMv2_4189_2_115 134882 135505 - 1.A.62.2.2
TC HRGMv2_4189_2 HRGMv2_4189_2_116 135520 136320 - 3.A.1.13.1
Gene ID: HRGMv2_4189_2_107
Type: CAZyme
Location: 122623 - 125160 (+)
Gene ID: HRGMv2_4189_2_108
Type: TC
Location: 125387 - 127621 (+)
Gene ID: HRGMv2_4189_2_109
Type: TC
Location: 127658 - 128467 (+)
Gene ID: HRGMv2_4189_2_110
Type: TC
Location: 128467 - 129357 (+)
Gene ID: HRGMv2_4189_2_111
Type: TC
Location: 129354 - 131336 (+)
Gene ID: HRGMv2_4189_2_112
Type: pfam
Location: 131433 - 132713 (-)
Gene ID: HRGMv2_4189_2_113
Type: TC
Location: 132895 - 134313 (+)
Gene ID: HRGMv2_4189_2_114
Type: pfam
Location: 134396 - 134740 (+)
Gene ID: HRGMv2_4189_2_115
Type: TC
Location: 134882 - 135505 (-)
Gene ID: HRGMv2_4189_2_116
Type: TC
Location: 135520 - 136320 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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