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Cluster: HRGMv2_4188_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4188_259 HRGMv2_4188_259_4 2390 3934 + 3.D.2.1.1
TC HRGMv2_4188_259 HRGMv2_4188_259_5 3953 5392 + 3.D.2.1.1
NULL(UNKNOWN) HRGMv2_4188_259 HRGMv2_4188_259_6 5497 5769 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4188_259 HRGMv2_4188_259_7 5776 6531 + LGT
TC HRGMv2_4188_259 HRGMv2_4188_259_8 6593 7144 - 4.A.1.1.15
TC HRGMv2_4188_259 HRGMv2_4188_259_9 7165 8829 - 8.A.7.1.4
TC HRGMv2_4188_259 HRGMv2_4188_259_10 8843 9613 - 2.A.121.1.1
pfam HRGMv2_4188_259 HRGMv2_4188_259_11 9775 10551 + ZipA_C
pfam HRGMv2_4188_259 HRGMv2_4188_259_12 10645 12717 + BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | HHH_2 | HHH_5
CAZyme HRGMv2_4188_259 HRGMv2_4188_259_13 12768 13769 - GH23
Gene ID: HRGMv2_4188_259_4
Type: TC
Location: 2390 - 3934 (+)
Gene ID: HRGMv2_4188_259_5
Type: TC
Location: 3953 - 5392 (+)
Gene ID: HRGMv2_4188_259_6
Type:
Location: 5497 - 5769 (+)
Gene ID: HRGMv2_4188_259_7
Type: pfam
Location: 5776 - 6531 (+)
Gene ID: HRGMv2_4188_259_8
Type: TC
Location: 6593 - 7144 (-)
Gene ID: HRGMv2_4188_259_9
Type: TC
Location: 7165 - 8829 (-)
Gene ID: HRGMv2_4188_259_10
Type: TC
Location: 8843 - 9613 (-)
Gene ID: HRGMv2_4188_259_11
Type: pfam
Location: 9775 - 10551 (+)
Gene ID: HRGMv2_4188_259_12
Type: pfam
Location: 10645 - 12717 (+)
Gene ID: HRGMv2_4188_259_13
Type: CAZyme
Location: 12768 - 13769 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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