Cluster: HRGMv2_4187_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4187
- CGC Family ID: CGCFAM_06272
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4187_25 | HRGMv2_4187_25_12 | 12690 | 13685 | + | 2.A.56.1.8 |
| pfam | HRGMv2_4187_25 | HRGMv2_4187_25_13 | 13737 | 14240 | + | DctQ |
| TC | HRGMv2_4187_25 | HRGMv2_4187_25_14 | 14251 | 15531 | + | 2.A.56.1.4 |
| TF | HRGMv2_4187_25 | HRGMv2_4187_25_15 | 15683 | 16678 | - | LacI |
| CAZyme | HRGMv2_4187_25 | HRGMv2_4187_25_16 | 16947 | 17945 | + | GH73 |
Gene ID: HRGMv2_4187_25_12
Type: TC
Location: 12690 - 13685 (+)
Type: TC
Location: 12690 - 13685 (+)
Gene ID: HRGMv2_4187_25_13
Type: pfam
Location: 13737 - 14240 (+)
Type: pfam
Location: 13737 - 14240 (+)
Gene ID: HRGMv2_4187_25_14
Type: TC
Location: 14251 - 15531 (+)
Type: TC
Location: 14251 - 15531 (+)
Gene ID: HRGMv2_4187_25_15
Type: TF
Location: 15683 - 16678 (-)
Type: TF
Location: 15683 - 16678 (-)
Gene ID: HRGMv2_4187_25_16
Type: CAZyme
Location: 16947 - 17945 (+)
Type: CAZyme
Location: 16947 - 17945 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.