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Cluster: HRGMv2_4187_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4187_17 HRGMv2_4187_17_4 2237 3775 + 3.D.2.1.1
TC HRGMv2_4187_17 HRGMv2_4187_17_5 3795 5237 + 3.D.2.1.1
TC HRGMv2_4187_17 HRGMv2_4187_17_6 5353 5871 - 4.A.1.1.1
TC HRGMv2_4187_17 HRGMv2_4187_17_7 5894 7558 - 8.A.7.1.3
TC HRGMv2_4187_17 HRGMv2_4187_17_8 7560 8321 - 2.A.121.1.3
pfam HRGMv2_4187_17 HRGMv2_4187_17_9 8600 9361 + ZipA_C
pfam HRGMv2_4187_17 HRGMv2_4187_17_10 9565 11643 + BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | HHH_2 | HHH_5
CAZyme HRGMv2_4187_17 HRGMv2_4187_17_11 11734 12759 - GH23
Gene ID: HRGMv2_4187_17_4
Type: TC
Location: 2237 - 3775 (+)
Gene ID: HRGMv2_4187_17_5
Type: TC
Location: 3795 - 5237 (+)
Gene ID: HRGMv2_4187_17_6
Type: TC
Location: 5353 - 5871 (-)
Gene ID: HRGMv2_4187_17_7
Type: TC
Location: 5894 - 7558 (-)
Gene ID: HRGMv2_4187_17_8
Type: TC
Location: 7560 - 8321 (-)
Gene ID: HRGMv2_4187_17_9
Type: pfam
Location: 8600 - 9361 (+)
Gene ID: HRGMv2_4187_17_10
Type: pfam
Location: 9565 - 11643 (+)
Gene ID: HRGMv2_4187_17_11
Type: CAZyme
Location: 11734 - 12759 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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