Cluster: HRGMv2_4187_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4187
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4187_15 | HRGMv2_4187_15_152 | 172122 | 173423 | - | 2.A.56.1.5 |
| TC | HRGMv2_4187_15 | HRGMv2_4187_15_153 | 173425 | 173943 | - | 2.A.56.1.5 |
| TC | HRGMv2_4187_15 | HRGMv2_4187_15_154 | 174043 | 175041 | - | 2.A.56.1.5 |
| pfam | HRGMv2_4187_15 | HRGMv2_4187_15_155 | 175497 | 176795 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_4187_15 | HRGMv2_4187_15_156 | 176969 | 178426 | + | GT5 |
Gene ID: HRGMv2_4187_15_152
Type: TC
Location: 172122 - 173423 (-)
Type: TC
Location: 172122 - 173423 (-)
Gene ID: HRGMv2_4187_15_153
Type: TC
Location: 173425 - 173943 (-)
Type: TC
Location: 173425 - 173943 (-)
Gene ID: HRGMv2_4187_15_154
Type: TC
Location: 174043 - 175041 (-)
Type: TC
Location: 174043 - 175041 (-)
Gene ID: HRGMv2_4187_15_155
Type: pfam
Location: 175497 - 176795 (+)
Type: pfam
Location: 175497 - 176795 (+)
Gene ID: HRGMv2_4187_15_156
Type: CAZyme
Location: 176969 - 178426 (+)
Type: CAZyme
Location: 176969 - 178426 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.